Align Arginine N-succinyltransferase; AST; AOST; EC 2.3.1.109 (characterized)
to candidate BPHYT_RS07705 BPHYT_RS07705 arginine succinyltransferase
Query= SwissProt::P0AE37 (344 letters) >FitnessBrowser__BFirm:BPHYT_RS07705 Length = 346 Score = 320 bits (819), Expect = 4e-92 Identities = 162/341 (47%), Positives = 227/341 (66%), Gaps = 8/341 (2%) Query: 1 MMVIRPVERSDVSALMQLASKTGGGLTSLPANEATLSARIERAIKTWQGELPKSEQGYVF 60 M+V+R V+R DV ALM+LA +TG GLT+ + L+AR+ERA +T + + E GY F Sbjct: 1 MIVVRVVQRGDVDALMRLAQETGPGLTTFKPDRDALAARVERARRTMEDKAEAHEAGYFF 60 Query: 61 VLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSS 120 V+ED++TG VAG+C IE AVGL P+YNYRV T+VHAS++L ++ + L +S+D TG + Sbjct: 61 VMEDTDTGDVAGVCGIETAVGLQQPFYNYRVSTVVHASQDLGIWTRMRALNISHDLTGYA 120 Query: 121 ELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVVAEMRGVIDEHGYSPFWQSLG 180 E+C+LFL P +R G G LLS+SRFMF+A FR++F ++ AE+RG D G SPFW+++G Sbjct: 121 EVCSLFLSPRYRTSGVGGLLSRSRFMFLAQFRERFPQRLCAELRGHFDAEGTSPFWRAVG 180 Query: 181 KRFFSMDFSRADFLCGTGQKAFIAELMPKHPIYTHFLSQEAQDVIGQVHPQTAPARAVLE 240 F+ +DF+ AD+L G+KAF+AELMP++P+Y L +EAQ +G H T PAR +LE Sbjct: 181 SHFYQIDFNAADYLSSHGRKAFLAELMPRYPVYVELLPEEAQQCVGLTHNDTIPARRMLE 240 Query: 241 KEGFRYRNYIDIFDGGPTLECDIDRVRAIRKSRLVEV------AEGQPAQGDFPACLVAN 294 EG RY N++DIFD GP LEC I +R +R+S +V V A G P G P +V+N Sbjct: 241 SEGLRYENHVDIFDAGPVLECHIADLRTVRESVVVPVEIAPSSASGAPQDG--PKSMVSN 298 Query: 295 ENYHHFRVVLVRTDPATERLILTAAQLDALKCHAGDRVRLV 335 + FRV +V P L+A + AL AGD VR++ Sbjct: 299 TSLGDFRVGVVAGVPQDGVFRLSATEAAALDVKAGDLVRVL 339 Lambda K H 0.321 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 348 Number of extensions: 8 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 344 Length of database: 346 Length adjustment: 29 Effective length of query: 315 Effective length of database: 317 Effective search space: 99855 Effective search space used: 99855 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 49 (23.5 bits)
Align candidate BPHYT_RS07705 BPHYT_RS07705 (arginine succinyltransferase)
to HMM TIGR03244 (astA: arginine N-succinyltransferase (EC 2.3.1.109))
../bin/blast/fastacmd -i /tmp/list.18748.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18748.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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