Align Isocitrate dehydrogenase [NADP]; IDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 (characterized)
to candidate BPHYT_RS20300 BPHYT_RS20300 isocitrate dehydrogenase
Query= SwissProt::P16100 (741 letters) >FitnessBrowser__BFirm:BPHYT_RS20300 Length = 742 Score = 1211 bits (3134), Expect = 0.0 Identities = 608/742 (81%), Positives = 662/742 (89%), Gaps = 1/742 (0%) Query: 1 MSTP-KIIYTLTDEAPALATYSLLPIIKAFTGSSGIAVETRDISLAGRLIATFPEYLTDT 59 MSTP KIIYTLTDEAPALATYSLLPI+KAFT SS + VETRDISLAGR+IA FP+YL+ Sbjct: 1 MSTPPKIIYTLTDEAPALATYSLLPIVKAFTRSSDVIVETRDISLAGRIIAAFPDYLSAE 60 Query: 60 QKISDDLAELGKLATTPDANIIKLPNISASVPQLKAAIKELQQQGYKLPDYPEEPKTDTE 119 QK DDLAELG L+T P+AN+IKLPNISASVPQLKAAI EL+ QGYKLP YP+ TD E Sbjct: 61 QKGPDDLAELGGLSTRPEANVIKLPNISASVPQLKAAITELRDQGYKLPAYPDVANTDAE 120 Query: 120 KDVKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWSADSKSHVAHMDNG 179 KDVKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWSADSKSHVAHM G Sbjct: 121 KDVKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWSADSKSHVAHMSGG 180 Query: 180 DFYGSEKAALIGAPGSVKIELIAKDGSSTVLKAKTSVQAGEIIDSSVMSKNALRNFIAAE 239 DFYGSEK+ALIGA GSVKIEL A DGS TVLK KT+VQAGEIID+SV+SKNALR+FI AE Sbjct: 181 DFYGSEKSALIGAAGSVKIELTATDGSKTVLKEKTAVQAGEIIDASVLSKNALRSFIEAE 240 Query: 240 IEDAKKQGVLLSVHLKATMMKVSDPIMFGQIVSEFYKDALTKHAEVLKQIGFDVNNGIGD 299 I DAK +GVL SVHLKATMMKVSDPI+FG +VS FYKD LTKHA+ L Q GF+ NNGIGD Sbjct: 241 IADAKAKGVLFSVHLKATMMKVSDPIIFGHVVSVFYKDVLTKHADALAQAGFNPNNGIGD 300 Query: 300 LYARIKTLPEAKQKEIEADIQAVYAQRPQLAMVNSDKGITNLHVPSDVIVDASMPAMIRD 359 LYAR+K LP IEADI+A Y QRPQLAMVNSDKGIT+LHVPSDVIVDASMPAMIR+ Sbjct: 301 LYARLKDLPAETVAAIEADIKAQYEQRPQLAMVNSDKGITSLHVPSDVIVDASMPAMIRE 360 Query: 360 SGKMWGPDGKLHDTKAVIPDRCYAGVYQVVIEDCKQHGAFDPTTMGSVPNVGLMAQKAEE 419 SGKMWG DG LHD KAVIPDRCYAGVYQ VIEDCK+HGAFDP TMG+VPNVGLMAQ AEE Sbjct: 361 SGKMWGADGALHDAKAVIPDRCYAGVYQAVIEDCKKHGAFDPVTMGTVPNVGLMAQAAEE 420 Query: 420 YGSHDKTFQIPADGVVRVTDESGKLLLEQSVEAGDIWRMCQAKDAPIQDWVKLAVNRARA 479 YGSHDKTFQIPA+GVVRVTD +G +L+EQ VEAGDIWRMCQ KDAP+QDWVKLAVNRARA Sbjct: 421 YGSHDKTFQIPANGVVRVTDAAGTVLIEQQVEAGDIWRMCQTKDAPVQDWVKLAVNRARA 480 Query: 480 TNTPAVFWLDPARAHDAQVIAKVERYLKDYDTSGLDIRILSPVEATRFSLARIREGKDTI 539 TNTPAVFWLD ARAHDAQ+I KVE+YLK++DT+GLDIR+++PVEAT+FS+ RIR GKDTI Sbjct: 481 TNTPAVFWLDAARAHDAQIIKKVEQYLKNHDTTGLDIRVMTPVEATKFSIERIRAGKDTI 540 Query: 540 SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMSGGGLFETGAGGSAPKHVQQFLEEGYL 599 SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLM+GGG+FETGAGGSAPKHVQQ +EEG+L Sbjct: 541 SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQLVEEGFL 600 Query: 600 RWDSLGEFLALAASLEHLGNAYKNPKALVLASTLDQATGKILDNNKSPARKVGEIDNRGS 659 RWDSLGEFLALAASLEHL +AY NPKA VLA TLDQATGK LDN+KSPARKVG IDNRGS Sbjct: 601 RWDSLGEFLALAASLEHLSSAYHNPKAQVLAKTLDQATGKFLDNDKSPARKVGGIDNRGS 660 Query: 660 HFYLALYWAQALAAQTEDKELQAQFTGIAKALTDNETKIVGELAAAQGKPVDIAGYYHPN 719 HFYLALYWA+ALAAQTED LQAQF G+AKAL +NE KIV ELAAAQGKPVDI GYY PN Sbjct: 661 HFYLALYWAEALAAQTEDAALQAQFAGVAKALAENEAKIVEELAAAQGKPVDIGGYYRPN 720 Query: 720 TDLTSKAIRPSATFNAALAPLA 741 +LTSKA+RPSAT N + +A Sbjct: 721 VELTSKAMRPSATLNKIVDAIA 742 Lambda K H 0.315 0.131 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1549 Number of extensions: 50 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 741 Length of database: 742 Length adjustment: 40 Effective length of query: 701 Effective length of database: 702 Effective search space: 492102 Effective search space used: 492102 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 55 (25.8 bits)
Align candidate BPHYT_RS20300 BPHYT_RS20300 (isocitrate dehydrogenase)
to HMM TIGR00178 (isocitrate dehydrogenase, NADP-dependent (EC 1.1.1.42))
../bin/blast/fastacmd -i /tmp/list.26475.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.26475.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.