Align phosphotransacetylase (EC 2.3.1.8) (characterized)
to candidate BPHYT_RS21700 BPHYT_RS21700 phosphotransacetylase
Query= metacyc::PTACLOS-MONOMER (333 letters) >FitnessBrowser__BFirm:BPHYT_RS21700 Length = 344 Score = 316 bits (810), Expect = 5e-91 Identities = 166/333 (49%), Positives = 230/333 (69%) Query: 1 MDLIESIWECAKQDKKRIILAEGEEKRNLIAADKIIKEGLAELVLVGDENKIKEKASELN 60 M I I E A++ RI+L+E E+ R L AA + +EG+A ++LVGD +I+E A+ + Sbjct: 1 MKAINRIIEQARRSPMRIVLSEAEDPRVLQAAQRATREGIARILLVGDATRIREAAAGFD 60 Query: 61 LDISKAEIMDPETSLKTETYARDFYELRKHKGMTIEKSEKMVRDPLYFATMALKDGYVDG 120 +D+S E++DP TS +YA + + LR KGMT+E++ K + +PL FA + ++ G+ DG Sbjct: 61 VDLSGMELVDPATSALASSYADELFALRSKKGMTLEQARKEILNPLCFANLMVRLGHADG 120 Query: 121 MVSGAVHTTGDLLRPGLQIIKTAPGVKIVSGFFVMIIPDCDYGEEGLLLFADCAVNPNPT 180 VSGAV+TT D++R +QII AP K+VS FF+M++ + + +G L+F+DCA+ P Sbjct: 121 SVSGAVNTTADVVRTAIQIIGIAPSFKLVSSFFLMMLCEPFHTLKGGLIFSDCALVVEPD 180 Query: 181 SDELADIAITTAETARKLCNVEPKVAMLSFSTMGSAKGEMVDKVKNAVEITKKFRPDLAI 240 + +LA+IA+ A++AR L EP+VAMLSFST GSA VDKV NA I ++ RP LAI Sbjct: 181 AAQLAEIAMAAADSARSLLMDEPRVAMLSFSTSGSAHHAAVDKVVNATHIVQERRPHLAI 240 Query: 241 DGELQLDAAIDSEVAALKAPSSNVAGNANVLVFPDLQTGNIGYKLVQRFAKAKAIGPICQ 300 DG++QLDAAI SE+A K S V G+ANVLVFP L+ GNIGYKL +R AKAIGP+ Q Sbjct: 241 DGDVQLDAAIVSEIALRKVKHSQVEGHANVLVFPSLEAGNIGYKLAERIGGAKAIGPLLQ 300 Query: 301 GFAKPINDLSRGCSSEDIVNVVAITVVQAQRGI 333 G KP NDLSRGCS++DI V A+T VQAQ + Sbjct: 301 GLRKPANDLSRGCSADDIYYVTAVTAVQAQAAL 333 Lambda K H 0.316 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 287 Number of extensions: 12 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 333 Length of database: 344 Length adjustment: 28 Effective length of query: 305 Effective length of database: 316 Effective search space: 96380 Effective search space used: 96380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate BPHYT_RS21700 BPHYT_RS21700 (phosphotransacetylase)
to HMM TIGR00651 (pta: phosphate acetyltransferase (EC 2.3.1.8))
../bin/blast/fastacmd -i /tmp/list.5890.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5890.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.