Align acetoacetate-CoA ligase (EC 6.2.1.16) (characterized)
to candidate BPHYT_RS23420 BPHYT_RS23420 acetoacetyl-CoA synthase
Query= BRENDA::Q9Z3R3 (650 letters) >FitnessBrowser__BFirm:BPHYT_RS23420 Length = 1021 Score = 415 bits (1067), Expect = e-120 Identities = 258/650 (39%), Positives = 338/650 (52%), Gaps = 18/650 (2%) Query: 1 MQAERPLWVPDREIVERSPMAEFIDWCGERFGRSFADYDAFHDWSVSERGAFWTAV--WE 58 M A P++ E V S M+ F G FADY H +S E FW W Sbjct: 13 MYAREPVFQNLPERVAGSRMSRFTAALENFTGERFADYPELHAYSTREFRRFWQCFLQWT 72 Query: 59 HCKVIGESGEKALVDGDRMLDARFFPEARLNFAENLLRKTGSGD---ALIFRGEDKVSYR 115 G E A V GD A FFP LN+A+++L + D AL R D Sbjct: 73 EGMEWGGKAEPACV-GDECETASFFPNVELNYAQSVLGSKIAPDESPALTARYADGRRET 131 Query: 116 LTWDELRALVSRLQQALRAQGIGAGDRVAAMMPNMPETIALMLATASVGAIWSSCSPDFG 175 +T ELR V+RL +L G+ GDR A+M N I LA ++GA S+ +P+ G Sbjct: 132 MTRGELRERVARLACSLNELGLCPGDRAVAIMRNDAHAIIAALAVTALGATLSTAAPETG 191 Query: 176 EQGVLDRFGQIAPKLFIVCDGYWYNGKRQDVDSKVRAVAKSLGAPTVIVPYAGDSAALAP 235 Q +LDRF + P++ + S V AVA +L PT+ D L Sbjct: 192 VQAILDRFEPLEPRILFAHTTQRSFDTAGSIASHVAAVAAAL--PTLTHVVCLDETPLPS 249 Query: 236 TV-EGGVTLADFIAGFQAGPLVFERLPFGHPLYILFSSGTTGVPKCIVHSAGGTLLQHLK 294 TV + +L D I A + R PF HPL+I+FSSGTTG PKCIVH AGGTLL+HLK Sbjct: 250 TVSQPQHSLRDLIVQGDAARFAWRRFPFNHPLFIMFSSGTTGKPKCIVHGAGGTLLEHLK 309 Query: 295 EHRFHCGLRDGERLFYFTTCGWMMWNWLASGLAVGATLCLYDGSPFCPDGNVLFDYAAAE 354 EH+ H L G++L++ T+C WMMWNW S LA G + YDG + + L+ A E Sbjct: 310 EHQLHSDLGPGDKLYFHTSCSWMMWNWQLSALASGVEIVTYDGP--VSEVDTLWRMVADE 367 Query: 355 RFAVFGTSAKYIDAVRKGGFTPARTHDLSSLRLMTSTGSPLSPEGFSFVYEGIKPDVQLA 414 R VFGTS Y+ G P L +LR M STG+ L F +V +KP +QL Sbjct: 368 RVTVFGTSPAYLKMCEDAGLKPGEQFGLHALRAMMSTGAVLYDSQFEWVRAYVKP-LQLQ 426 Query: 415 SISGGTDIVSCFVLGNPLKPVWRGEIQGPGLGLAVDVWNDEGKPVRGEKGELVCTRAFPS 474 SISGGTDI+ CFVLGNP PV+ GE Q LGL V WN EG P GELVC FPS Sbjct: 427 SISGGTDIIGCFVLGNPNLPVYAGEAQCRSLGLDVQAWN-EGAPT-SMTGELVCVNPFPS 484 Query: 475 MPVMFWNDPDGAKYRAAYFDRFDNVWCHGDFAEWTPHGGIVIHGRSDATLNPGGVRIGTA 534 P+ F+ D DG+++ AAYF VW HGD E++ G +HGRSD LN G+ + Sbjct: 485 RPLGFFGDADGSRFHAAYFKANPGVWTHGDIIEFSAQGSARLHGRSDGVLNVRGINVSPG 544 Query: 535 EIYNQVEQMDEVAEALCIGQDWED----DVRVVLFVRLARGVELTEALTREIKNRIRSGA 590 EIY V + E+ +++ + Q D RVVL + L RG +++ AL ++ + Sbjct: 545 EIYRIVSGIGEINQSMVVAQTTHDASGSGQRVVLLLVLRRGAKMSAALASRVRRELMLQG 604 Query: 591 SPRHVPAKIIAVADIPRTKSGKIVELAVRDVVHGRPVKNKEALANPEALD 640 S VP I V +P T +GK E A RD V+G PV+N +LANP ++ Sbjct: 605 SAALVPDVIAEVEALPVTHNGKASEAAARDAVNGLPVRNLSSLANPGCVE 654 Lambda K H 0.322 0.139 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1744 Number of extensions: 100 Number of successful extensions: 8 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 650 Length of database: 1021 Length adjustment: 41 Effective length of query: 609 Effective length of database: 980 Effective search space: 596820 Effective search space used: 596820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (26.2 bits)
Align candidate BPHYT_RS23420 BPHYT_RS23420 (acetoacetyl-CoA synthase)
to HMM TIGR01217 (acetoacetate-CoA ligase (EC 6.2.1.16))
../bin/blast/fastacmd -i /tmp/list.24585.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.24585.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.