Align Probable propionate kinase; EC 2.7.2.15 (characterized)
to candidate BPHYT_RS26200 BPHYT_RS26200 acetate kinase
Query= SwissProt::P74879 (404 letters) >FitnessBrowser__BFirm:BPHYT_RS26200 Length = 386 Score = 243 bits (621), Expect = 5e-69 Identities = 157/398 (39%), Positives = 206/398 (51%), Gaps = 28/398 (7%) Query: 5 IMAINAGSSSLKFQLLEMPQGD--MLCQGLIERIGMADAQVTIKTHSQKW--QETVPVAD 60 I+ +N+GSSSLKF L D +L +G E IG D + IK + Q+ + Sbjct: 12 ILVLNSGSSSLKFGLFRRAGNDESLLLEGSAEGIGRDDGSLRIKAPDGRVLVQQERVLES 71 Query: 61 HRDAVTLLLEKLLGYQIINSLRDIDGVGHRVAHGGEFFKDSTLVTDETLAQIERLAELAP 120 DA+ L + L VGHRV HGG + +T + Q+ AP Sbjct: 72 QIDALQKLAQVLKEQHHARPA----AVGHRVVHGGPRLRTHQRITADVRRQLHEAVHFAP 127 Query: 121 LHNPVNALGIHVFRQLLPDAPSVAVFDTAFHQTLDEPAYIYPLPWHYYAELGIRRYGFHG 180 LH P I ++ DAP A FDTAFH TL A LP YAE G+ RYGFHG Sbjct: 128 LHIPPALALIDEAEKIFDDAPHFACFDTAFHATLPLRAAHLALP-RRYAEAGVMRYGFHG 186 Query: 181 TSHKYVSGVLAEKLGVPLSALRVICCHLGNGSSICAIKNGRSVNTSMGFTPQSGVMMGTR 240 S++ L +LG L A R + HLGNGSS+CA+++GRS++TSMG TP GV MGTR Sbjct: 187 LSYES----LVTRLGADLPA-RAVFAHLGNGSSVCALRDGRSIDTSMGLTPTGGVPMGTR 241 Query: 241 SGDIDPSILPWIAQRESKTPQQLNQLLNNESGLLGVSGVSSDYRDVEQAANTGNRQAKLA 300 SGD+DP +L ++ + E L LLN +SGL G + SD + +E+ A G+ A LA Sbjct: 242 SGDLDPGVLLYLMRVEKLDAGALETLLNRQSGLAGYADGESDMQALEKRAAAGDTNASLA 301 Query: 301 LTLFAERIRATIGSYIMQMGGLDALVFTGGIGENSARARSAVCHNLQFLGLAVDEEKNQR 360 L FA +R TIG Y +GG+D LVFTGGIGE+S R VC L F+GL + Sbjct: 302 LDAFATAVRKTIGGYAALLGGIDLLVFTGGIGEHSQEIRKRVCDGLAFMGLTQSDPAG-- 359 Query: 361 NATFIQTENALVKVAVINTNEELMIAQDVMRIALPATE 398 KV I+T EE IA+ + AT+ Sbjct: 360 ------------KVRAIHTEEEKQIARHCRTLLQQATQ 385 Lambda K H 0.319 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 371 Number of extensions: 14 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 404 Length of database: 386 Length adjustment: 31 Effective length of query: 373 Effective length of database: 355 Effective search space: 132415 Effective search space used: 132415 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate BPHYT_RS26200 BPHYT_RS26200 (acetate kinase)
to HMM TIGR00016 (ackA: acetate kinase (EC 2.7.2.1))
../bin/blast/fastacmd -i /tmp/list.13271.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13271.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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