Align Ribokinase (EC 2.7.1.15) (characterized)
to candidate BPHYT_RS20695 BPHYT_RS20695 ribokinase
Query= reanno::pseudo1_N1B4:Pf1N1B4_6031 (305 letters) >FitnessBrowser__BFirm:BPHYT_RS20695 Length = 310 Score = 315 bits (808), Expect = 7e-91 Identities = 167/300 (55%), Positives = 213/300 (71%), Gaps = 2/300 (0%) Query: 4 KVVVIGSLNMDLVTRAPRLPRGGETLIGKSFATVSGGKGANQAVAAARLGAQVSMVGCVG 63 +V+V+GS+N DLV RAP LPR GET+ G F+ V+GGKG NQAVAAAR+GAQV+MVGCVG Sbjct: 9 RVLVVGSINTDLVARAPHLPRPGETIGGHEFSQVAGGKGGNQAVAAARIGAQVAMVGCVG 68 Query: 64 NDAYGEALRGALLAEQIDCQAVSTVEDS-SGVALIVVDDNSQNAIVIVAGANGALTPEVI 122 DA G L AE IDC + +GVA++ V D+ QN IV+VAG+NG LTPE + Sbjct: 69 KDANGAQRVKDLEAEGIDCSGIEVHPGQPTGVAMVTVSDDGQNTIVVVAGSNGELTPESV 128 Query: 123 DRFDAVLQAADVIICQLEVPDATVGHALKRGRELGKTVILNPAPASRPLPVDWYAAIDYL 182 R +A ++A DV++CQLE P +V L R LGK +LNPAPA+ PLP +W +DYL Sbjct: 129 ARHEAAIKACDVVVCQLETPWDSVHATLALARRLGKITVLNPAPATGPLPAEWLPLVDYL 188 Query: 183 IPNESEASVLSGLPVDSLSTAETAATRLIAMGAGKVIITLGSQGS-LFADGQRFEHFPAA 241 +PNE EA++L+GLPV+S S A AAT L GA VI+TLG+QG+ L +G HFPA Sbjct: 189 VPNEVEAAILAGLPVESQSGARRAATELQQGGARNVIVTLGAQGAYLLVEGGEGMHFPAP 248 Query: 242 KVKAVDTTAAGDTFVGGFAAALAAGKGEADAIRFGQVAAALSVTRAGAQPSIPTLSDVQA 301 +V+AVDTTAAGDTF+G FAA LA+ + AI Q AA++SVTRAGAQPSIPT ++V + Sbjct: 249 QVQAVDTTAAGDTFIGVFAAQLASRQPLESAISLAQRAASISVTRAGAQPSIPTRAEVDS 308 Lambda K H 0.316 0.132 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 306 Number of extensions: 10 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 305 Length of database: 310 Length adjustment: 27 Effective length of query: 278 Effective length of database: 283 Effective search space: 78674 Effective search space used: 78674 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 48 (23.1 bits)
Align candidate BPHYT_RS20695 BPHYT_RS20695 (ribokinase)
to HMM TIGR02152 (rbsK: ribokinase (EC 2.7.1.15))
../bin/blast/fastacmd -i /tmp/list.30278.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.30278.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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