Align triose-phosphate isomerase (EC 5.3.1.1) (characterized)
to candidate BPHYT_RS06610 BPHYT_RS06610 triosephosphate isomerase
Query= BRENDA::P0A858 (255 letters) >FitnessBrowser__BFirm:BPHYT_RS06610 Length = 259 Score = 216 bits (549), Expect = 5e-61 Identities = 123/257 (47%), Positives = 156/257 (60%), Gaps = 6/257 (2%) Query: 2 RHPLVMGNWKLNG---SRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSH 58 R LV+GNWK++G + + V++ EL A V + P Y+ ++ EGS Sbjct: 5 RAKLVVGNWKMHGRLAENATLLQAVAHGAGELP--ADVRVGVCVPSPYLAQSQSLLEGSR 62 Query: 59 IMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKE 118 ++ G Q+V GA+TGE +A M+ D GA I+GHSERR YH+ES EL+A K E Sbjct: 63 VVWGVQDVSAFTHGAYTGEVAAPMVVDFGATLAIVGHSERRAYHRESAELVAVKTQRALE 122 Query: 119 QGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSA 178 GLTP++C+GET E EAG TE+V Q+D VL V+AYEPVWAIGTGKSA Sbjct: 123 AGLTPIVCVGETLEEREAGLTEQVVGTQLDEVLAKLSVQEAARLVVAYEPVWAIGTGKSA 182 Query: 179 TPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLK 238 + QAQAVH F+R +A A +A+ V + YGGSV NA ELF QPDIDG L+GGASLK Sbjct: 183 SSEQAQAVHAFLRARLAAKGAAVAD-VPLLYGGSVKPENAEELFRQPDIDGGLIGGASLK 241 Query: 239 ADAFAVIVKAAEAAKQA 255 F I KAA A A Sbjct: 242 DQDFLAICKAAAATSVA 258 Lambda K H 0.316 0.130 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 191 Number of extensions: 10 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 255 Length of database: 259 Length adjustment: 24 Effective length of query: 231 Effective length of database: 235 Effective search space: 54285 Effective search space used: 54285 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 47 (22.7 bits)
Align candidate BPHYT_RS06610 BPHYT_RS06610 (triosephosphate isomerase)
to HMM TIGR00419 (tpiA: triose-phosphate isomerase (EC 5.3.1.1))
../bin/blast/fastacmd -i /tmp/list.5342.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5342.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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