Align Galactarate dehydratase (EC 4.2.1.42) (characterized)
to candidate BPHYT_RS24160 BPHYT_RS24160 D-galactarate dehydratase
Query= reanno::HerbieS:HSERO_RS15800 (522 letters) >FitnessBrowser__BFirm:BPHYT_RS24160 Length = 529 Score = 786 bits (2031), Expect = 0.0 Identities = 387/526 (73%), Positives = 447/526 (84%), Gaps = 15/526 (2%) Query: 12 APRYIMMNDTDNVAIVVNDGGLPAGTVFPDGLTLVDRVPQGHKIALRDLKQGEAIVRYDV 71 +P YI ++ DNVAIVVNDGGL G VFPDGL L +RVPQGHK+AL DL +G+ ++RY+V Sbjct: 4 SPLYIRVHPNDNVAIVVNDGGLGEGAVFPDGLALRERVPQGHKVALADLAEGDEVIRYNV 63 Query: 72 AIGYAVRDIPKGGWIEESLVQMPPARELDNLPIATKKPAPQPPLEGYTFEGYRNADGSVG 131 IGYA++ +PKG WI E +++MP L++LPIAT K PPLEGYTFEGYRNADGSVG Sbjct: 64 VIGYALKALPKGSWINEHVIRMPSPPGLEDLPIATIKAPDMPPLEGYTFEGYRNADGSVG 123 Query: 132 TRNLLAITTTVQCVAGVVEHAVKRIRAELLPKYPNVEDVVALEHTYGCGVAIDAPNAGIP 191 +RN+LAITTTVQCVA VV+HAV RI+AELLP+YPNV+DVV+L HTYGCGVAIDAP+A +P Sbjct: 124 SRNILAITTTVQCVADVVQHAVTRIKAELLPRYPNVDDVVSLGHTYGCGVAIDAPDAMVP 183 Query: 192 IRTLRNISLNPNFGGQAMVVSLGCEKLQPNRLLPENMIPIHKQGEPY------------- 238 IRT+RNISLNPNFGG+ M+VSLGCEKLQP RL+P IPI Sbjct: 184 IRTVRNISLNPNFGGEVMMVSLGCEKLQPERLMPPGTIPIAAAANVAEVADIGDIEADLN 243 Query: 239 --VVCLQDAEHVGFNSMIDSIMNMAEARLTELNKRRRETCPASDLVVGVQCGGSDAFSGV 296 VV LQD HVGF SMI+SIM MA+ L LN RRRETCPASDLV+GVQCGGSDAFSG+ Sbjct: 244 GDVVVLQDESHVGFQSMIESIMKMADGHLKRLNNRRRETCPASDLVIGVQCGGSDAFSGL 303 Query: 297 TANPAVGFATDLLVRAGASVMFSEVTEVRDGIDQLTSRAVNEEVAQAMIREMDWYDNYLK 356 TANPAVG+ATDLLVRAGA+VMFSEVTEVRDG+DQLT+RA N EVA A+IREM WYD+YLK Sbjct: 304 TANPAVGYATDLLVRAGATVMFSEVTEVRDGVDQLTARAANPEVAAAIIREMQWYDDYLK 363 Query: 357 QGGVDRSANTTPGNKKGGLANIVEKAMGSIVKSGSSPISGVLSPGDKLQQKGLIYAATPA 416 +GG DRSANTTPGNKKGGL+NIVEKAMGSI+KSG+S ISGVLSPG+K++QKGLIYAATPA Sbjct: 364 RGGADRSANTTPGNKKGGLSNIVEKAMGSIIKSGNSAISGVLSPGEKVKQKGLIYAATPA 423 Query: 417 SDFICGTLQLAAGMNLHIFTTGRGTPYGLAAVPVIKVATRNDLARRWHDLMDVNAGRIAS 476 SDFICGTLQ+AAG+NLH+FTTGRGTPY LA VPVIKVATR+DLARRWHDLMD+NAG IA+ Sbjct: 424 SDFICGTLQVAAGINLHVFTTGRGTPYSLAEVPVIKVATRSDLARRWHDLMDINAGTIAT 483 Query: 477 GEASIEDVGWELFQLMLDVASGKKRTWAEQWKLHNALTLFNPAPVT 522 GE++IE+VGWELF+LMLDVASG+K T AE+ KLHNALTLFNPAPVT Sbjct: 484 GESTIEEVGWELFRLMLDVASGRKETCAEKLKLHNALTLFNPAPVT 529 Lambda K H 0.317 0.134 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 940 Number of extensions: 33 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 522 Length of database: 529 Length adjustment: 35 Effective length of query: 487 Effective length of database: 494 Effective search space: 240578 Effective search space used: 240578 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.6 bits)
Align candidate BPHYT_RS24160 BPHYT_RS24160 (D-galactarate dehydratase)
to HMM TIGR03248 (garD: galactarate dehydratase (EC 4.2.1.42))
../bin/blast/fastacmd -i /tmp/list.6214.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.6214.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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