Align tartronate semialdehyde reductase 2 (characterized)
to candidate BPHYT_RS08825 BPHYT_RS08825 tartronate semialdehyde reductase
Query= ecocyc::G6278-MONOMER (292 letters) >FitnessBrowser__BFirm:BPHYT_RS08825 Length = 302 Score = 370 bits (950), Expect = e-107 Identities = 187/291 (64%), Positives = 230/291 (79%), Gaps = 1/291 (0%) Query: 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFI 61 K+GFIGLGIMG MA NL + GH L V PV ++L +V V + V +A+DI+ I Sbjct: 3 KIGFIGLGIMGAHMARNLIKGGHSLFVNGAYPVPEDLSKTTSV-VANSTAVAQAADIVII 61 Query: 62 MVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSG 121 MVPDTP V VLF ++G KGK ++DMSSISP++T+ FA+++N LG DYLDAPVSG Sbjct: 62 MVPDTPDVANVLFADDGVAAGLSKGKLVIDMSSISPLDTQAFAKKINALGVDYLDAPVSG 121 Query: 122 GEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIE 181 GE+GARE +L+IMVGG E F KPLFEL+GKNI+L+G NG GQTCKVANQIIVALNIE Sbjct: 122 GEVGAREASLTIMVGGPEKAFATAKPLFELMGKNISLIGENGAGQTCKVANQIIVALNIE 181 Query: 182 AVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLNL 241 AV+EALLFA+++GADP RVR+ALMGGFASSRILEVHGERM KR F+PGF+I LHQKDLNL Sbjct: 182 AVAEALLFAARSGADPERVRKALMGGFASSRILEVHGERMTKRKFDPGFRIELHQKDLNL 241 Query: 242 ALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMANHKLA 292 AL A+ L + LP+TA+ Q+LF+ CAANGG DHSA+V+ALE+MAN ++A Sbjct: 242 ALDGARKLGIALPHTASAQQLFSVCAANGGKAWDHSAMVRALEIMANFEVA 292 Lambda K H 0.318 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 328 Number of extensions: 8 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 292 Length of database: 302 Length adjustment: 26 Effective length of query: 266 Effective length of database: 276 Effective search space: 73416 Effective search space used: 73416 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate BPHYT_RS08825 BPHYT_RS08825 (tartronate semialdehyde reductase)
to HMM TIGR01505 (2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60))
../bin/blast/fastacmd -i /tmp/list.13183.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13183.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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