Align D-mannonate dehydratase (EC 4.2.1.8) (characterized)
to candidate BPHYT_RS28515 BPHYT_RS28515 mannonate dehydratase
Query= metacyc::MONOMER-17955 (360 letters) >FitnessBrowser__BFirm:BPHYT_RS28515 Length = 350 Score = 399 bits (1025), Expect = e-116 Identities = 195/353 (55%), Positives = 248/353 (70%), Gaps = 12/353 (3%) Query: 3 LVFRWYGEKHDTVTLEQIRQIPGVEGVVGALFDIPVGEVWPFEEIMKLKETVEKAGLKLE 62 + FRWYG+ D V L IRQIPG+ GVV A++D+PVGEVWP + I LKE +E GL LE Sbjct: 1 MTFRWYGDT-DPVPLAYIRQIPGMVGVVSAIYDVPVGEVWPIDRIRSLKEKIEAHGLTLE 59 Query: 63 VIESVNVHEDIKLGLPTRDRYIENYKKTIRNLAKAGVKVVCYNFMPVFDWMRTDLHKKLP 122 VIESV VHEDIKLG PTRD I NY +T+RNL GVKVVCYNFMPVFDW RT L LP Sbjct: 60 VIESVPVHEDIKLGKPTRDTLIVNYGQTLRNLGACGVKVVCYNFMPVFDWTRTSLEMPLP 119 Query: 123 DGSETMEYDHRLIEGVTPDELIKRVKEGSQGFVLPGWEWD-RLEKLRETFELYKNVDEEK 181 DGS T+ +D + I R + S+G LPGW+ R E+L+ Y+ +DE Sbjct: 120 DGSTTLAFDTQAI----------RELDVSEGIQLPGWDASYRPEQLKALLRDYEALDEAG 169 Query: 182 LFENLVYFLERVIPVCEECDVKLAIHPDDPPWSIFGLPRIITNKENIERMLKAVDSPYNG 241 L+ NL YFL +IPV +E +K+AIHPDDPP IFGLPRI+ N+ +++R+L VD P NG Sbjct: 170 LWANLDYFLRAIIPVAKEAGIKMAIHPDDPPRPIFGLPRIVKNRADLQRVLDIVDDPANG 229 Query: 242 ITFCMGSLGANPENNIPEMIRYFGKMGRIHFAHVRNLKFTGEKSFYETAHPSFCGSHDLF 301 +T C GSLGA+ +N+IP ++R FG GRIHFAH+RN++ F+ET+H S GS D+ Sbjct: 230 LTLCSGSLGADLQNDIPALVREFGARGRIHFAHLRNVQTNAAGDFHETSHRSADGSLDMA 289 Query: 302 EVMKAFHDIGYEGYIRPDHGRLIWGEKARPGYGLYDRALGATYILGLWEAIDK 354 E++KA+ + G+EGY RPDHGR+IWGE R GYGL+DRALGA Y+ G+WE + K Sbjct: 290 EIVKAYFETGFEGYARPDHGRMIWGETGRAGYGLFDRALGAVYLNGIWEGLAK 342 Lambda K H 0.322 0.142 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 467 Number of extensions: 20 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 360 Length of database: 350 Length adjustment: 29 Effective length of query: 331 Effective length of database: 321 Effective search space: 106251 Effective search space used: 106251 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate BPHYT_RS28515 BPHYT_RS28515 (mannonate dehydratase)
to HMM TIGR00695 (uxuA: mannonate dehydratase (EC 4.2.1.8))
../bin/blast/fastacmd -i /tmp/list.17795.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17795.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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