Align dihydrolipoyl dehydrogenase; EC 1.8.1.4 (characterized)
to candidate BPHYT_RS08120 BPHYT_RS08120 dihydrolipoamide dehydrogenase
Query= CharProtDB::CH_015561 (478 letters) >FitnessBrowser__BFirm:BPHYT_RS08120 Length = 476 Score = 512 bits (1318), Expect = e-149 Identities = 263/477 (55%), Positives = 344/477 (72%), Gaps = 6/477 (1%) Query: 1 MTQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEKYTDAEGKLALGGTCLNVGCIPSKAL 60 M+++FDVVVIGAGPGGY+AAI+AAQLG ACIEK+ + G L LGGTCLNVGCIPSKAL Sbjct: 1 MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACIEKWKNPAGALKLGGTCLNVGCIPSKAL 60 Query: 61 LDSSWKYKEAKESFNVHGISTGEVKMDVAAMVGRKAGIVKNLTGGVATLFKANGVTSIQG 120 L SS +++ A HGIS V +D+A M+ RK GIV+ +T G+ LF+ N +T ++G Sbjct: 61 LASSEEFENASHHLADHGISVENVSVDIAKMMARKEGIVEKMTKGIEFLFRKNKITWLKG 120 Query: 121 HGKLL----AGKKVEVTKADGTTEVIEAENVILASGSRPIDIPPAPVDQNVIVDSTGALE 176 HGK AG ++EV+ +G TE + A+NVI+A+GS+ +P PVD ++ D+ GAL Sbjct: 121 HGKFTGKTDAGVQIEVS-GEGETETVTAKNVIIATGSKARHLPNVPVDNKIVADNEGALS 179 Query: 177 FQAVPKRLGVIGAGVIGLELGSVWARLGAEVTVLEALDTFLMAADTAVSKEAQKTLTKQG 236 F++ PK+L VIGAGVIGLELGSVW RLGA+VTVLEAL FL AAD A++KEA K KQG Sbjct: 180 FESTPKKLAVIGAGVIGLELGSVWRRLGADVTVLEALPEFLGAADQALAKEAAKQFKKQG 239 Query: 237 LDIKLGARVTGSKVNGNEVEVTYTNAEGE-QKITFDKLIVAVGRRPVTTDLLAADSGVTI 295 LDI +G +V N V V YT+ +G QK+ D+LIV++GR P T +L G+ Sbjct: 240 LDIHVGVKVGEVTTTDNSVTVNYTDKDGNAQKLEADRLIVSIGRVPNTDNLGLEAIGLKA 299 Query: 296 DERGYIFVDDYCATSVPGVYAIGDVVRGMMLAHKASEEGIMVVERIKGHKAQMNYDLIPS 355 +ERG+I VDD+CAT+VP VYAIGDVVRG MLAHKA +EG++V E I G K ++Y+ +P Sbjct: 300 NERGFIDVDDHCATAVPNVYAIGDVVRGPMLAHKAEDEGVLVAEIIDGQKPHIDYNCVPW 359 Query: 356 VIYTHPEIAWVGKTEQALKAEGVEVNVGTFPFAASGRAMAANDTGGFVKVIADAKTDRVL 415 VIYT PEIAWVGKTEQ LKAEG E+ G FP A+GRA+ N GFVK+IADAKTD +L Sbjct: 360 VIYTEPEIAWVGKTEQQLKAEGREIKTGQFPMMANGRALGINKAEGFVKMIADAKTDEIL 419 Query: 416 GVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFSHPTLSEALHEAALAVNGGAIHV 472 GVH+I A++L+ + +AMEF ++ED+G + HP+LSE + EAALAV+ A+++ Sbjct: 420 GVHIIAADASDLIAEAVVAMEFKAASEDIGRICHPHPSLSEVMREAALAVDKRALNM 476 Lambda K H 0.316 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 721 Number of extensions: 29 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 478 Length of database: 476 Length adjustment: 33 Effective length of query: 445 Effective length of database: 443 Effective search space: 197135 Effective search space used: 197135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 51 (24.3 bits)
Align candidate BPHYT_RS08120 BPHYT_RS08120 (dihydrolipoamide dehydrogenase)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.7879.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7879.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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