Align 2-methylcitrate dehydratase (EC 4.2.1.79) (characterized)
to candidate BPHYT_RS33975 BPHYT_RS33975 2-methylcitrate dehydratase
Query= BRENDA::P77243 (483 letters) >FitnessBrowser__BFirm:BPHYT_RS33975 Length = 483 Score = 792 bits (2046), Expect = 0.0 Identities = 378/483 (78%), Positives = 431/483 (89%) Query: 1 MSAQINNIRPEFDREIVDIVDYVMNYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKL 60 MSA I+N+RP+ D + DIVDYV +Y I S +A +TA +CL+DTLGCGLEAL YPAC KL Sbjct: 1 MSAPISNVRPDPDSVLADIVDYVRDYRIDSALALETARHCLIDTLGCGLEALTYPACTKL 60 Query: 61 LGPIVPGTVVPNGVRVPGTQFQLDPVQAAFNIGAMIRWLDFNDTWLAAEWGHPSDNLGGI 120 +GPIVPGT+VPNG +VPGT FQLDPVQAAFNIGAMIRWLDFNDTWLAAEWGHPSDNLGGI Sbjct: 61 MGPIVPGTIVPNGAKVPGTSFQLDPVQAAFNIGAMIRWLDFNDTWLAAEWGHPSDNLGGI 120 Query: 121 LATADWLSRNAVASGKAPLTMKQVLTAMIKAHEIQGCIALENSFNRVGLDHVLLVKVAST 180 LATADWLSR+A+A+GKAPL MK VL AMIKAHEIQGCIALENSFN+VGLDHVLLVK+AST Sbjct: 121 LATADWLSRSAIAAGKAPLAMKDVLIAMIKAHEIQGCIALENSFNKVGLDHVLLVKLAST 180 Query: 181 AVVAEMLGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLALMAK 240 AVV ++L LTR+E++NAVS A+VDG +LRTYRHAPNTG+RKSWAAGDATSRAVRLAL++K Sbjct: 181 AVVGQLLDLTRDELINAVSQAFVDGHALRTYRHAPNTGSRKSWAAGDATSRAVRLALISK 240 Query: 241 TGEMGYPSALTAPVWGFYDVSFKGESFRFQRPYGSYVMENVLFKISFPAEFHSQTAVEAA 300 TGEMGYPS LTA WGFYDV FKG +F+FQRPYGSYVMENVLFKISFPAEFH+QTAVEA Sbjct: 241 TGEMGYPSVLTAKTWGFYDVLFKGNAFQFQRPYGSYVMENVLFKISFPAEFHAQTAVEAT 300 Query: 301 MTLYEQMQAAGKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQYMVAIPLLFGR 360 M L+ Q+ AAG++ DI K+TIRTHEA IRIIDKKGPLNNPADRDHCIQYMVA+PL+ GR Sbjct: 301 MKLHAQLNAAGRSVDDISKITIRTHEAAIRIIDKKGPLNNPADRDHCIQYMVAVPLIHGR 360 Query: 361 LTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEV 420 LTAADYED++AQD RID LR K+ C EDP FT DYHDPEKR+IANA+T+EF DG+ F+EV Sbjct: 361 LTAADYEDSIAQDPRIDVLRAKMECVEDPQFTQDYHDPEKRSIANALTIEFNDGSSFDEV 420 Query: 421 VVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQMPVNEYLDL 480 +VEYPIGH RRR+DGIP LV+KFK NLAR+FP +QQ IL+VSLD+ARLE MPVNEY+DL Sbjct: 421 IVEYPIGHKRRREDGIPLLVEKFKTNLARRFPVKQQLAILDVSLDQARLEAMPVNEYVDL 480 Query: 481 YVI 483 YVI Sbjct: 481 YVI 483 Lambda K H 0.321 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 787 Number of extensions: 12 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 483 Length of database: 483 Length adjustment: 34 Effective length of query: 449 Effective length of database: 449 Effective search space: 201601 Effective search space used: 201601 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 52 (24.6 bits)
Align candidate BPHYT_RS33975 BPHYT_RS33975 (2-methylcitrate dehydratase)
to HMM TIGR02330 (prpD: 2-methylcitrate dehydratase (EC 4.2.1.79))
../bin/blast/fastacmd -i /tmp/list.19949.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19949.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.