Align dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate BPHYT_RS12830 BPHYT_RS12830 dihydrolipoamide dehydrogenase
Query= BRENDA::Q0KBV8 (594 letters) >FitnessBrowser__BFirm:BPHYT_RS12830 Length = 600 Score = 897 bits (2317), Expect = 0.0 Identities = 460/608 (75%), Positives = 515/608 (84%), Gaps = 22/608 (3%) Query: 1 MSVIEVKVPDIGDFDAVEVIEVLVKAGDTVEVEQSLIVLESDKASMDVPSSAAGKVVEVK 60 MS++EVKVPDIGDF V+VIEV +KAGD +E EQ+L+ LESDKAS++VPS AG V EV+ Sbjct: 1 MSLVEVKVPDIGDFKDVDVIEVNIKAGDVIENEQALMTLESDKASIEVPSDTAGTVKEVR 60 Query: 61 VKVGDKVGQGAVICTIE-------AQQAAAAPA--PAQAPAPAQA-PAPAAAAPA----P 106 VK GDKV QG VI +E A+ A APA P +APA A+A P A AAPA P Sbjct: 61 VKAGDKVSQGTVIALVETSADAAPAKDAPKAPAKEPEKAPAQAEAKPQAAQAAPAKAATP 120 Query: 107 APAAASHSGGADIQCEMLVLGAGPGGYSAAFRAADLGMNTVLVERYSTLGGVCLNVGCIP 166 AP A S SG ADI+C+MLVLG+GPGGYSAAFR+ADLGM TVLVERY+TLGGVCLNVGCIP Sbjct: 121 APQAGSFSGNADIECDMLVLGSGPGGYSAAFRSADLGMKTVLVERYATLGGVCLNVGCIP 180 Query: 167 SKALLHNAAVIDEAKALAAHGILFGEAKIDLDGLRHYKNQVVGKLTGGLAGMAKARKVQV 226 SKALLH A VIDEA+AL +HGI FG+ +IDLD LR +K+ VV KLTGGLAGMAK RKV+V Sbjct: 181 SKALLHTALVIDEAEALRSHGITFGKPQIDLDKLRDFKSGVVKKLTGGLAGMAKMRKVEV 240 Query: 227 VRGIGNFLDPHHMEVELTEGEGKRSTGKKTVIRFEKAIIAAGSQAVKLPFIPEDPRIVDS 286 V G G+F+DPHHMEV++ G K V++F++AIIAAGS+AVKLPFIPEDPR+VDS Sbjct: 241 VTGTGSFVDPHHMEVQVEGG--------KKVVKFKQAIIAAGSEAVKLPFIPEDPRVVDS 292 Query: 287 TGALELPEVPNKMLVIGGGIIGLEMATVYSTLGADIDVVEMLDGLMNGADRDLVKVWEKK 346 TGALEL ++P +MLVIGGGIIGLEMATVY+TLGA IDVVEMLDGLM GADRDLVKVWEK Sbjct: 293 TGALELRQIPQRMLVIGGGIIGLEMATVYATLGAQIDVVEMLDGLMAGADRDLVKVWEKY 352 Query: 347 NKDRFGKVMLKTKTVGVEAKPDGIYVKFEGEAAPAEPQRYDLVLVSVGRSPNGKRISAEK 406 N RF VMLKTKT EAK DGIYV FEGE APAE QRYDLVLV+VGRSPNGK+I A+K Sbjct: 353 NSKRFANVMLKTKTTAAEAKDDGIYVSFEGEKAPAEAQRYDLVLVAVGRSPNGKKIGADK 412 Query: 407 AGVAVSERGFINVDKQMRTNVPHIFAIGDIVGQPMLAHKAVHEAHVAAEAAHGEKAYFDA 466 AGVAV+ERGFI+VDKQMRTNVPHIFAIGDIVGQPMLAHKAVHEAHVAAE AHGEKAYFDA Sbjct: 413 AGVAVTERGFIDVDKQMRTNVPHIFAIGDIVGQPMLAHKAVHEAHVAAEVAHGEKAYFDA 472 Query: 467 KQIPSVAFTDPEVAWAGLTEDECKEKGIKYSKGVFPWAASGRAIANGRDEGFTKLIFDEE 526 QIPSVA+TDPEVAWAG TED+ K +GIKY K VFPWAASGRAIANGRDEGFTKL+FDEE Sbjct: 473 LQIPSVAYTDPEVAWAGKTEDQLKAEGIKYGKAVFPWAASGRAIANGRDEGFTKLLFDEE 532 Query: 527 THRVIGGGIVGTHAGDLISEVCLAIEMGADAVDIGKTIHPHPTLGESIGMAAEIYEGTCT 586 THRVIGGGIVG +AGDLISEVCLA+EMGADA DIGKTIHPHPTLGESIGMAAE+YEG CT Sbjct: 533 THRVIGGGIVGLNAGDLISEVCLAVEMGADATDIGKTIHPHPTLGESIGMAAELYEGVCT 592 Query: 587 DVPPPRKR 594 D+PP +K+ Sbjct: 593 DLPPQKKK 600 Lambda K H 0.316 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1111 Number of extensions: 33 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 594 Length of database: 600 Length adjustment: 37 Effective length of query: 557 Effective length of database: 563 Effective search space: 313591 Effective search space used: 313591 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)
Align candidate BPHYT_RS12830 BPHYT_RS12830 (dihydrolipoamide dehydrogenase)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.8620.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8620.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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