GapMind for catabolism of small carbon sources

 

Alignments for a candidate for acs in Burkholderia phytofirmans PsJN

Align Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 (characterized)
to candidate BPHYT_RS27780 BPHYT_RS27780 acetyl-CoA synthetase

Query= SwissProt::P31638
         (660 letters)



>FitnessBrowser__BFirm:BPHYT_RS27780
          Length = 658

 Score = 1028 bits (2657), Expect = 0.0
 Identities = 477/631 (75%), Positives = 555/631 (87%)

Query: 25  AIPSMEAYQALCDEAERDYEGFWARHARELLHWTKPFTKVLDQSNAPFYKWFEDGELNAS 84
           AI  M+AY+AL  EAE D++ FWAR ARE L W +PFTK+LD SNAPFYKWFEDGELNAS
Sbjct: 23  AISGMDAYRALVAEAETDHQAFWARLAREHLQWRRPFTKILDDSNAPFYKWFEDGELNAS 82

Query: 85  YNCLDRNLQNGNADKVAIVFEADDGSVTRVTYRELHGKVCRFANGLKALGIRKGDRVVIY 144
           YNCLDRNL  G ADK AIVFEADDG+VTR+TY+ L+ +VCR AN L+A G+ +GDRVVIY
Sbjct: 83  YNCLDRNLAKGLADKTAIVFEADDGTVTRITYQALYHRVCRLANALRARGVTRGDRVVIY 142

Query: 145 MPMSVEGVVAMQACARLGATHSVVFGGFSAKSLQERLVDVGAVALITADEQMRGGKALPL 204
           MPMS+EG+ AM ACAR+GA HSVVFGGFSAKSL ERLV+VGAVA++TADEQ+RGGK LPL
Sbjct: 143 MPMSIEGIAAMLACARIGAPHSVVFGGFSAKSLHERLVNVGAVAVMTADEQVRGGKTLPL 202

Query: 205 KAIADDALALGGCEAVRNVIVYRRTGGKVAWTEGRDRWMEDVSAGQPDTCEAEPVSAEHP 264
           KAI D+ALA+GG  AV+ V+VYRRTGG++ W   RD W+ ++   Q DTCE E V AEHP
Sbjct: 203 KAIVDEALAMGGTVAVKTVVVYRRTGGRIPWITQRDAWLHELEHAQSDTCEPEWVGAEHP 262

Query: 265 LFVLYTSGSTGKPKGVQHSTGGYLLWALMTMKWTFDIKPDDLFWCTADIGWVTGHTYIAY 324
           LFVLYTSGSTG PKGVQHSTGGYLLWA +TMKWTFDIKPDD+FWCTADIGW+TGHTYI Y
Sbjct: 263 LFVLYTSGSTGAPKGVQHSTGGYLLWAAVTMKWTFDIKPDDVFWCTADIGWITGHTYICY 322

Query: 325 GPLAAGATQVVFEGVPTYPNAGRFWDMIARHKVSIFYTAPTAIRSLIKAAEADEKIHPKQ 384
           GP A GATQV+FEGVPTYP+AGRFW MI RHKVSIFYTAPTAIRSLIKAA+A+E +HP+ 
Sbjct: 323 GPTAVGATQVIFEGVPTYPDAGRFWQMIERHKVSIFYTAPTAIRSLIKAADANEAVHPRS 382

Query: 385 YDLSSLRLLGTVGEPINPEAWMWYYKNIGNERCPIVDTFWQTETGGHMITPLPGATPLVP 444
           +DLSSLR+LGTVGEPINP AW WY +++G  RCP++DTFWQTETGGHMI+PLPG TPLVP
Sbjct: 383 FDLSSLRILGTVGEPINPSAWTWYAQHVGGGRCPVLDTFWQTETGGHMISPLPGVTPLVP 442

Query: 445 GSCTLPLPGIMAAIVDETGHDVPNGNGGILVVKRPWPAMIRTIWGDPERFRKSYFPEELG 504
           GSCTLP+PGI AAIVDETGH+VPNG+GG+LV+++PWP+MIRTIWG+PERFR  Y+P++LG
Sbjct: 443 GSCTLPMPGIDAAIVDETGHEVPNGHGGVLVIRKPWPSMIRTIWGNPERFRHGYYPDDLG 502

Query: 505 GKLYLAGDGSIRDKDTGYFTIMGRIDDVLNVSGHRMGTMEIESALVSNPLVAEAAVVGRP 564
           GKLYLAGDG+IRD+DTGYFTI GRIDDVLNVSGHR+GTMEIESAL ++P VAEAAVVGRP
Sbjct: 503 GKLYLAGDGAIRDRDTGYFTITGRIDDVLNVSGHRLGTMEIESALSAHPSVAEAAVVGRP 562

Query: 565 DDMTGEAICAFVVLKRSRPTGEEAVKIATELRNWVGKEIGPIAKPKDIRFGDNLPKTRSG 624
           D+  GEAI AFVVLK +RP+G +A ++A ELR WVGKEIGPIAKPKDIRFGD +PKTRSG
Sbjct: 563 DETCGEAIVAFVVLKTARPSGPDAKRVADELRAWVGKEIGPIAKPKDIRFGDAMPKTRSG 622

Query: 625 KIMRRLLRSLAKGEEITQDTSTLENPAILEQ 655
           K++RRLLRS+AKGE ITQDTS++ENP ++ Q
Sbjct: 623 KVVRRLLRSVAKGEAITQDTSSVENPTVISQ 653


Lambda     K      H
   0.319    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1574
Number of extensions: 77
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 658
Length adjustment: 38
Effective length of query: 622
Effective length of database: 620
Effective search space:   385640
Effective search space used:   385640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)

Align candidate BPHYT_RS27780 BPHYT_RS27780 (acetyl-CoA synthetase)
to HMM TIGR02188 (acs: acetate--CoA ligase (EC 6.2.1.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.28081.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.28081.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.