Align Malate synthase G (EC 2.3.3.9) (characterized)
to candidate BPHYT_RS09815 BPHYT_RS09815 malate synthase
Query= reanno::psRCH2:GFF353 (726 letters) >FitnessBrowser__BFirm:BPHYT_RS09815 Length = 724 Score = 979 bits (2530), Expect = 0.0 Identities = 476/726 (65%), Positives = 590/726 (81%), Gaps = 10/726 (1%) Query: 1 MTERVQVGGLQVAKVLYDFVNNEAIPGTGVDAAAFWAGADSVIHDLAPKNRALLAKRDDL 60 MT+ GGLQVA L FV EA+PGTG+D+AAFW+G D+++H+LAPKNRALLA+RD L Sbjct: 1 MTQMNTRGGLQVAANLDQFVETEALPGTGIDSAAFWSGFDALVHELAPKNRALLAERDRL 60 Query: 61 QAQIDAWHQARAGQAHDAVAYKSFLQEIGYLLPEAEDFQATTENVDEEIARMAGPQLVVP 120 Q ++D WH+A G D AY++FL+ IGY++P +ATT+NVD EIA AGPQLVVP Sbjct: 61 QTELDNWHRANPGPVRDLRAYRAFLEGIGYIVPAPASVKATTDNVDTEIAEQAGPQLVVP 120 Query: 121 IMNARFALNAANARWGSLYDALYGTDAISEADGASKGPGYNEIRGNKVIAYARNFLNEAA 180 + N R+ALNAANARWGSLYDALYGTDAI E GA K +N +RG VIAYAR FL++AA Sbjct: 121 LSNQRYALNAANARWGSLYDALYGTDAIPETGGAEKQKAFNPVRGAAVIAYARKFLDQAA 180 Query: 181 PLETGSHVDSTGYRIEGGKLVVSLKDGSTTGLKNPAQLQGFQGEASAPIAVLLKNNGIHF 240 PL GSH D+T Y ++GGKLVV+LK+G T+ LK PAQ G+QGE SAP AVLLK+NG+HF Sbjct: 181 PLANGSHADATRYSVDGGKLVVTLKNG-TSELKTPAQFIGYQGEESAPSAVLLKHNGLHF 239 Query: 241 EIQIDPASPIGQTDAAGVKDILMESALTTIMDCEDSIAAVDADDKTVVYRNWLGLMKGDL 300 EIQID + IG+TDAA VKD+++E+A++TI+DCEDS+AAVDADDK ++YRNWLGLM GDL Sbjct: 240 EIQIDASDSIGRTDAAHVKDVVVEAAVSTIIDCEDSVAAVDADDKVLLYRNWLGLMTGDL 299 Query: 301 VEELEKGGKRITRAMNPDRVYTKADGNGELTLHGRSLLFIRNVGHLMTNDAILDKEGNEV 360 EE+ K GK TR +N DRVYT A+G + LHGRSLLFIRNVGHLMTN A+L K+G+E+ Sbjct: 300 TEEVTKNGKTFTRRLNADRVYTAANGTAPVVLHGRSLLFIRNVGHLMTNPAVLTKDGHEI 359 Query: 361 PEGIMDGLFTSLIAVHNLNGNTSRKNTRTGSMYIVKPKMHGPEEVAFATELFGRVEDVLG 420 PEGI+D + T+L A+H+ + N+RTGS+YIVKPKMHGP EVAFA+ELF RVED+L Sbjct: 360 PEGILDAVITTLCALHD---RKHQLNSRTGSIYIVKPKMHGPAEVAFASELFSRVEDLLK 416 Query: 421 LPRNTLKVGIMDEERRTTINLKACIKEARERVVFINTGFLDRTGDEIHTSMEAGPMVRKA 480 LPRNT+K+GIMDEERRT++NL ACI EA ERV FINTGFLDRTGDE+H++MEAGPM+RK Sbjct: 417 LPRNTIKMGIMDEERRTSVNLLACIAEASERVAFINTGFLDRTGDEMHSAMEAGPMMRKG 476 Query: 481 AMKAEKWISAYENNNVDVGLACGLQGKAQIGKGMWAMPDLMAAMLEQKVGHPMAGANTAW 540 MK+ WI+AYE +NV VGL+ GL+G++QIGKGMWAMPDLM AMLEQK+ HP AGANTAW Sbjct: 477 DMKSSAWIAAYERSNVLVGLSAGLRGRSQIGKGMWAMPDLMHAMLEQKIAHPKAGANTAW 536 Query: 541 VPSPTAATLHAMHYHKIDVQARQVELAKREKASI-----DDILTIPLAQDTNWSEEEKRN 595 VPSPTAATLHA+HYH++DVQA Q EL + + A++ D +LTIP+ + WS++E R+ Sbjct: 537 VPSPTAATLHALHYHQVDVQAVQRELERTDYATVRDELLDGLLTIPVVAEAKWSDDEIRS 596 Query: 596 ELDNNSQGILGYMVRWVEQGVGCSKVPDINDIALMEDRATLRISSQHVANWMRHGVVTKD 655 E+DNN+QGILGY+VRW++QGVGCSKVPDI+D+ LMEDRATLRISSQH+ANW+ HGVV ++ Sbjct: 597 EIDNNAQGILGYVVRWIDQGVGCSKVPDIHDVGLMEDRATLRISSQHIANWLYHGVVKRE 656 Query: 656 QVVESLKRMAPVVDRQNQGDPLYRPMAPDFDNSVAFQAALELVLEGTKQPNGYTEPVLHR 715 V E+ KRMA VVD QN GDPLY+PMAP FD ++AF+AA LV EG +QP+GYTEP+LH+ Sbjct: 657 LVEETFKRMAKVVDEQNAGDPLYKPMAPGFD-TIAFKAAQALVFEGRQQPSGYTEPLLHK 715 Query: 716 RRREFK 721 R E K Sbjct: 716 FRLEVK 721 Lambda K H 0.316 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1463 Number of extensions: 67 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 726 Length of database: 724 Length adjustment: 40 Effective length of query: 686 Effective length of database: 684 Effective search space: 469224 Effective search space used: 469224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 55 (25.8 bits)
Align candidate BPHYT_RS09815 BPHYT_RS09815 (malate synthase)
to HMM TIGR01345 (glcB: malate synthase G (EC 2.3.3.9))
../bin/blast/fastacmd -i /tmp/list.19878.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19878.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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