GapMind for catabolism of small carbon sources

 

Alignments for a candidate for PRO3 in Bacteroides thetaiotaomicron VPI-5482

Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; EC 1.5.1.2; PCA reductase (uncharacterized)
to candidate 353283 BT3757 pyrroline-5-carboxylate reductase (NCBI ptt file)

Query= curated2:P74572
         (267 letters)



>FitnessBrowser__Btheta:353283
          Length = 257

 Score =  128 bits (322), Expect = 1e-34
 Identities = 84/258 (32%), Positives = 139/258 (53%), Gaps = 5/258 (1%)

Query: 3   IQLGIIGGGVMAEAILARLIAEKTYAPEEIIVGEPHGARRDYLQKTYQ-VRVSPDNQEAA 61
           +++ IIG G M  +I   L      A  +IIV  P   + + L++ +  +  +  N EAA
Sbjct: 1   MKIAIIGAGNMGGSIARGLAKGSLIADSDIIVSNPSAGKLEKLKEEFPGISTTLSNTEAA 60

Query: 62  NVSEVLLLAVKPQVLDRVLASLAGGANRPLVISILAGVSLQRIQKGF--PDHAIIRAMPN 119
             ++V++LAVKP  ++ V+  L   + + LV S+ AG+S + +      P+  + R +PN
Sbjct: 61  TGADVVILAVKPWFVESVMRELKLKSKQTLV-SVAAGISFEELAHFVIAPEMPMFRLIPN 119

Query: 120 TPATVGAGMTAIAANKMVEPDQLAKAKAIFSAVGNVVEVPENLMDAVTGVSGSGPAYVAL 179
           T  +    MT IAA    +   L   + +F+ +G  + +PE+ + A T ++  G AYV  
Sbjct: 120 TAISELESMTLIAARNTNDEQNLFMLR-LFNEMGMAMLIPEDKIAATTALTSCGIAYVLK 178

Query: 180 MIEALADGGVLAGLPRAIAQKLALQTVLGTAELIKETEEHPAQIKDKVTSPGGTTIAGVA 239
            I+A    G+  G+    A ++  Q+V G A LI   + HP+   DKVT+PGG TI G+ 
Sbjct: 179 YIQAAMQAGIEMGIRPKDAMEMVAQSVKGAAALILNNDTHPSVEIDKVTTPGGITIKGIN 238

Query: 240 VLEKMGFRSAIIEAVRAA 257
            LE  GF SA+I+A++A+
Sbjct: 239 ELEHNGFTSAVIKAMKAS 256


Lambda     K      H
   0.316    0.133    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 143
Number of extensions: 10
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 257
Length adjustment: 25
Effective length of query: 242
Effective length of database: 232
Effective search space:    56144
Effective search space used:    56144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate 353283 BT3757 (pyrroline-5-carboxylate reductase (NCBI ptt file))
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.18028.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18028.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.