Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; EC 1.5.1.2; PCA reductase (uncharacterized)
to candidate 353283 BT3757 pyrroline-5-carboxylate reductase (NCBI ptt file)
Query= curated2:P74572 (267 letters) >FitnessBrowser__Btheta:353283 Length = 257 Score = 128 bits (322), Expect = 1e-34 Identities = 84/258 (32%), Positives = 139/258 (53%), Gaps = 5/258 (1%) Query: 3 IQLGIIGGGVMAEAILARLIAEKTYAPEEIIVGEPHGARRDYLQKTYQ-VRVSPDNQEAA 61 +++ IIG G M +I L A +IIV P + + L++ + + + N EAA Sbjct: 1 MKIAIIGAGNMGGSIARGLAKGSLIADSDIIVSNPSAGKLEKLKEEFPGISTTLSNTEAA 60 Query: 62 NVSEVLLLAVKPQVLDRVLASLAGGANRPLVISILAGVSLQRIQKGF--PDHAIIRAMPN 119 ++V++LAVKP ++ V+ L + + LV S+ AG+S + + P+ + R +PN Sbjct: 61 TGADVVILAVKPWFVESVMRELKLKSKQTLV-SVAAGISFEELAHFVIAPEMPMFRLIPN 119 Query: 120 TPATVGAGMTAIAANKMVEPDQLAKAKAIFSAVGNVVEVPENLMDAVTGVSGSGPAYVAL 179 T + MT IAA + L + +F+ +G + +PE+ + A T ++ G AYV Sbjct: 120 TAISELESMTLIAARNTNDEQNLFMLR-LFNEMGMAMLIPEDKIAATTALTSCGIAYVLK 178 Query: 180 MIEALADGGVLAGLPRAIAQKLALQTVLGTAELIKETEEHPAQIKDKVTSPGGTTIAGVA 239 I+A G+ G+ A ++ Q+V G A LI + HP+ DKVT+PGG TI G+ Sbjct: 179 YIQAAMQAGIEMGIRPKDAMEMVAQSVKGAAALILNNDTHPSVEIDKVTTPGGITIKGIN 238 Query: 240 VLEKMGFRSAIIEAVRAA 257 LE GF SA+I+A++A+ Sbjct: 239 ELEHNGFTSAVIKAMKAS 256 Lambda K H 0.316 0.133 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 143 Number of extensions: 10 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 267 Length of database: 257 Length adjustment: 25 Effective length of query: 242 Effective length of database: 232 Effective search space: 56144 Effective search space used: 56144 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 47 (22.7 bits)
Align candidate 353283 BT3757 (pyrroline-5-carboxylate reductase (NCBI ptt file))
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))
../bin/blast/fastacmd -i /tmp/list.18028.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18028.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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