Align deoxyribose-phosphate aldolase (EC 4.1.2.4) (characterized)
to candidate 352790 BT3263 putative deoxyribose-phosphate aldolase (NCBI ptt file)
Query= BRENDA::P0A6L0 (259 letters) >FitnessBrowser__Btheta:352790 Length = 300 Score = 166 bits (420), Expect = 5e-46 Identities = 100/240 (41%), Positives = 138/240 (57%), Gaps = 14/240 (5%) Query: 15 MDLTTLNDDDTDEKVIALCHQAKT------PVGNTAAICIYPRFIPIARKTLKEQGTPEI 68 +DLTTLN D+DE V+ + + N AAIC+YP F I + TL+ G I Sbjct: 55 IDLTTLNSTDSDESVMHFTEKVNEFDNEFPDMKNVAAICVYPNFADIVKNTLQVDG---I 111 Query: 69 RIATVTN-FPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKE 127 IA V+ FP I++ +AET AIA GADE+D+V ++G+ + + ++ KE Sbjct: 112 NIACVSGGFPSSQTFIEVKVAETALAIADGADEIDIVISIGKFLSGDYETMCEEIQELKE 171 Query: 128 ACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAVNATPESARIMME 187 C + LKVI+ETG LK + I+KAS +S+ +GADFIKTSTGK ATPE+A +M E Sbjct: 172 VCKERH--LKVILETGALKTASNIKKASILSMYSGADFIKTSTGKQQPAATPEAAYVMCE 229 Query: 188 VIRD--MGVEKTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFGASSLLASLL 245 I++ +GFKPAGG+ T DA Y I E+ G +W + R +R G S L LL Sbjct: 230 AIKEYYQKTNNKIGFKPAGGINTVHDAIIYYTIVKEILGEEWLNNRLFRLGTSRLANLLL 289 Lambda K H 0.317 0.133 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 183 Number of extensions: 11 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 259 Length of database: 300 Length adjustment: 26 Effective length of query: 233 Effective length of database: 274 Effective search space: 63842 Effective search space used: 63842 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.7 bits)
Align candidate 352790 BT3263 (putative deoxyribose-phosphate aldolase (NCBI ptt file))
to HMM TIGR00126 (deoC: deoxyribose-phosphate aldolase (EC 4.1.2.4))
../bin/blast/fastacmd -i /tmp/list.12015.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.12015.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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