Align UDP-glucose 4-epimerase; EC 5.1.3.2 (characterized, see rationale)
to candidate 350151 BT0623 putative UDP-glucose 4-epimerase (NCBI ptt file)
Query= uniprot:L0FXG3 (337 letters) >FitnessBrowser__Btheta:350151 Length = 344 Score = 399 bits (1024), Expect = e-116 Identities = 196/338 (57%), Positives = 256/338 (75%), Gaps = 2/338 (0%) Query: 2 QQILITGGAGYIGSHTAVALVNAGYEPIIVDNFSNSNKEVLNGLEKILGAPVKYHEGDCN 61 ++IL+TGG GYIGSHT V L N+GYE II+DN SNS+ +V++ +EK+ G + + DC Sbjct: 3 ERILVTGGTGYIGSHTVVELQNSGYEVIIIDNLSNSSADVVDNIEKVSGIRPAFEKLDCL 62 Query: 62 DRKFMQAVFEE-NDLQGVIHFAASKAVGESTKIPLTYYSNNINSLIILLETMKQFGVKDI 120 D + AVF + ++ +IHFAASKAVGES + PL YY NN+ SLI LLE M + GV+ I Sbjct: 63 DFAGLDAVFAKYKGIKAIIHFAASKAVGESVEKPLLYYRNNLVSLINLLELMPKHGVEGI 122 Query: 121 VFSSSCTVYGQPDKLPVKETTPRKDAESPYGNTKKICEDILTDHVKSGAPARVVALRYFN 180 VFSSSCTVYGQPD+LPV E P K AESPYGNTK+I E+I+ D + SGAP + LRYFN Sbjct: 123 VFSSSCTVYGQPDELPVTEKAPIKKAESPYGNTKQINEEIIRDTIASGAPINAILLRYFN 182 Query: 181 PIGAHPSSLIGELPLGVPANLIPFVTQTGAGIREKITVFGDDYNTPDGTCIRDYIHVMDL 240 PIGAHP++L+GELP GVP NLIP++TQT GIREK++VFGDDY+TPDG+CIRD+I+V+DL Sbjct: 183 PIGAHPTALLGELPNGVPQNLIPYLTQTAMGIREKLSVFGDDYDTPDGSCIRDFINVVDL 242 Query: 241 ADAHVKSIQYLADQPE-NFIDLFNVGTGNGNTVMEVIKAFEKVSEKPLNYEIGPRRSGDI 299 A AHV +I+ + +Q + +++FN+GTG G +V+E+I FEK + LNY+I RR+GDI Sbjct: 243 AKAHVIAIRRILEQKQKEKVEVFNIGTGRGVSVLELINGFEKATGVKLNYQIVGRRAGDI 302 Query: 300 EKVWANTDKVSKVLGWTPQFGLEEALRDAWNWQLSLKK 337 EKVWAN D ++ LGW LE+ LR AWNWQL L++ Sbjct: 303 EKVWANPDYANQELGWKAVETLEDTLRSAWNWQLKLRE 340 Lambda K H 0.316 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 413 Number of extensions: 12 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 337 Length of database: 344 Length adjustment: 28 Effective length of query: 309 Effective length of database: 316 Effective search space: 97644 Effective search space used: 97644 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate 350151 BT0623 (putative UDP-glucose 4-epimerase (NCBI ptt file))
to HMM TIGR01179 (galE: UDP-glucose 4-epimerase GalE (EC 5.1.3.2))
../bin/blast/fastacmd -i /tmp/list.12554.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.12554.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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