Align TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase; EC 1.8.1.4 (characterized)
to candidate 352713 BT3186 dihydrolipoamide dehydrogenase (NCBI ptt file)
Query= CharProtDB::CH_006552 (578 letters) >FitnessBrowser__Btheta:352713 Length = 447 Score = 333 bits (853), Expect = 1e-95 Identities = 188/449 (41%), Positives = 270/449 (60%), Gaps = 9/449 (2%) Query: 118 LVVIGGGPGGYVAAIRAAQLGAKVTLIEKESLGGTCLNVGCIPTKVLLHSSQLLTEMKEG 177 +++IGGGP GY AA A + G V LIEK +LGG CLN GCIPTK LL+S++ + Sbjct: 5 VIIIGGGPAGYTAAEAAGKAGLSVLLIEKNNLGGVCLNEGCIPTKTLLYSAKTYDSARHS 64 Query: 178 DKLGIDIEGSIVVNWKHIQKRKKIVIKKLVSGVSGLLTCNKVKVIKGTAKFESKDTILVT 237 K +++ + + I RK V++KLV GV LT N V ++ G A+ K+T+ Sbjct: 65 SKYAVNVS-EVSFDLPKIIARKSKVVRKLVLGVKAKLTSNNVAMVTGEAQIIDKNTVRCG 123 Query: 238 KEDGVAEKVNFDNAIIATGSMPFIPEIEGNKLSGVIDSTGALSLESNPESIAIIGGGVIG 297 +E N +N I+ TGS FIP I G + AL + P S+AI+GGGVIG Sbjct: 124 EET-----YNAENLILCTGSETFIPPITGVETVNYWTHRDALDSKELPASLAIVGGGVIG 178 Query: 298 VEFASIFNSLGCKVSIIEMLPHILPPMDREISEIAKAKLIRDGININNNCKVTRIEQGED 357 +EFAS FNSLG +V++IEM+ IL MD+E+S + +A+ + GI + KV + Q E+ Sbjct: 179 MEFASFFNSLGVQVTVIEMMDEILGGMDKELSALLRAEYAKRGIKFLLSTKVVALSQTEE 238 Query: 358 GLKVSFIGDKGEESIDVEKVLIAVGRRSNIEGLDVEKIGV-KTEGGSIIVNDKMETNVEG 416 G VS+ +G+ S+ EK+L++VGRR +G +E + + KT G+I VN+KM+T++ G Sbjct: 239 GAVVSYENAEGKGSVIAEKLLMSVGRRPVTKGFGLENLNLDKTGRGAIKVNEKMQTSLSG 298 Query: 417 IYAIGDCTGKIMLAHVASDQGVVAAENIMGQNKKMDYKTVPACVYTKPELASVGLTEEQA 476 +Y GD TG +LAH A + VA +I+G+ M Y+ +P VYT PE+A VG TEE A Sbjct: 299 VYVCGDLTGFSLLAHTAVREAEVAVHSILGKEDAMSYRAIPGVVYTNPEIAGVGETEESA 358 Query: 477 KEKGIDYKVGKFQLAANGKSLIMNE-TGGVIKIITDKKYEEILGVHILGPRATDLITEAA 535 KGI YKV K +A +G+ + NE GV K++ D++ E I+G H+LG A+++IT A Sbjct: 359 SAKGITYKVVKLPMAYSGRFVAENEGVNGVCKVLLDEQ-ERIIGAHVLGNPASEIITLAG 417 Query: 536 LALRLEATLEEIITTVHAHPTVGEAMKEA 564 A+ L T V HPTVGE +EA Sbjct: 418 TAIELGLTAAAWKKVVFPHPTVGEIFREA 446 Lambda K H 0.313 0.134 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 610 Number of extensions: 29 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 578 Length of database: 447 Length adjustment: 34 Effective length of query: 544 Effective length of database: 413 Effective search space: 224672 Effective search space used: 224672 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 52 (24.6 bits)
Align candidate 352713 BT3186 (dihydrolipoamide dehydrogenase (NCBI ptt file))
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.6559.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.6559.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.