Align Rhamnulokinase (EC 2.7.1.5) (characterized)
to candidate 353289 BT3763 rhamnulose kinase/L-fuculose kinase (NCBI ptt file)
Query= reanno::Koxy:BWI76_RS00680 (488 letters) >FitnessBrowser__Btheta:353289 Length = 485 Score = 365 bits (937), Expect = e-105 Identities = 210/464 (45%), Positives = 275/464 (59%), Gaps = 9/464 (1%) Query: 8 AVDLGASSGRVMLASYQPGQQTLALREIHRFTNSLQKVDGFDCWDLDSLEGEIRRGLEKV 67 AVDLGA+SGR +L S+ G L L EI+RF N L +V G WD+ +L I GL+ V Sbjct: 7 AVDLGATSGRTILGSFIEGG--LNLEEINRFPNHLIEVGGHFYWDIYALYRHIIDGLKLV 64 Query: 68 CEQGILIDSIGIDTWGVDYVLLDKRGQRVGLPVSYRDSRTQGLMRHAEAQLGRAEIYRRS 127 +G I SIGIDTWGVD+VLL K G + P +YRD T G +++ R+E+Y ++ Sbjct: 65 AHRGESIASIGIDTWGVDFVLLGKDGNLLRQPYAYRDPHTVGAPEAFFSRISRSEVYGKT 124 Query: 128 GIQFLPFNTLYQLRALVEQQPELVSQAAHALLIPDYFSFRLTGNMNWEYTNATTTQLVNI 187 GIQ + FN+L+QL L + A L +PD S+ LTG M EYT A+T QLVN Sbjct: 125 GIQVMNFNSLFQLDTLRRNHDSALEAADKVLFMPDALSYMLTGKMVTEYTIASTAQLVNA 184 Query: 188 NSDSWDEDLLNWSGAPREWFGTPTHPGNVIG------HWICPQGNHIPVVAVASHDTASA 241 ++ + +LL G E FG PG IG I G IPV+AVA HDT SA Sbjct: 185 HTQRLEPELLKAVGLQEENFGRFVFPGEKIGTLTEEVQKITGLGA-IPVIAVAGHDTGSA 243 Query: 242 VIASPLASKNAAYLSSGTWSLMGFESKIPCTSDAALRANITNEGGAEGRYRVLKNIMGLW 301 V A P +N AYLSSGTWSLMG E+ P + N TNEGG EG R+LKNI G+W Sbjct: 244 VAAVPALDRNFAYLSSGTWSLMGVETDAPVITAETEALNFTNEGGVEGTIRLLKNICGMW 303 Query: 302 LLQRVLREQNVSDLPALIARTAALPACRFVIDCNDDRFINPDDMSAEIQAACRESGQPVP 361 LL+R + P LI + R +I+ +DD F NP DM I+ CR +GQPVP Sbjct: 304 LLERCRLNWGDTSYPELITEADSCEPFRSLINPDDDCFANPADMEQAIREYCRTTGQPVP 363 Query: 362 DTDAELARCIFDSLALLYTRVLNELAALRGQPFSQLHIVGGGCQNELLNQLCADACGITV 421 + ++ RCIF+SLAL Y +VL L AL +P LH++GGG +N+LLNQ A+A GI V Sbjct: 364 EQRGQIVRCIFESLALRYRQVLENLRALSPRPIETLHVIGGGSRNDLLNQFTANAIGIPV 423 Query: 422 VAGPVEASTLGNIGIQLMTLDELNNVDEFRQVVRQNYALTTFTP 465 VAGP EA+ +GN+ IQ MT+ E +V RQ++ ++ L T+ P Sbjct: 424 VAGPSEATAIGNVMIQAMTVGEATDVAGMRQLISRSIPLKTYHP 467 Lambda K H 0.320 0.135 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 596 Number of extensions: 22 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 488 Length of database: 485 Length adjustment: 34 Effective length of query: 454 Effective length of database: 451 Effective search space: 204754 Effective search space used: 204754 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.6 bits)
Align candidate 353289 BT3763 (rhamnulose kinase/L-fuculose kinase (NCBI ptt file))
to HMM TIGR02627 (rhaB: rhamnulokinase (EC 2.7.1.5))
../bin/blast/fastacmd -i /tmp/list.9345.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9345.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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