Align Aminomethyltransferase; EC 2.1.2.10; Glycine cleavage system T protein (uncharacterized)
to candidate 354110 BT4584 putative aminomethyltransferase (NCBI ptt file)
Query= curated2:B2RI74 (362 letters) >FitnessBrowser__Btheta:354110 Length = 361 Score = 521 bits (1341), Expect = e-152 Identities = 256/362 (70%), Positives = 294/362 (81%), Gaps = 1/362 (0%) Query: 1 MKTTPFTDVHIALGAKMHEFAGYNMPIEYGGIIDEHMNVVNNVGVFDVSHMGEFWVKGPN 60 MKTTPFT+ HIALGAKMHEFAGYNMPIEY GIIDEH+ V N VGVFDVSHMGEFWVKGP Sbjct: 1 MKTTPFTEKHIALGAKMHEFAGYNMPIEYSGIIDEHLTVCNAVGVFDVSHMGEFWVKGPQ 60 Query: 61 ALRFLQKVSSNDASKLAVGQVQYCCFPNNDGGIVDDFLLYRYEEEKYMMVPNAANIAKDW 120 AL FLQKV+SN+ + L G++QY CFPN +GGIVDD L+Y YE EKY++V NAANI KDW Sbjct: 61 ALAFLQKVTSNNVAALVPGKIQYTCFPNEEGGIVDDLLVYCYEPEKYLLVVNAANIEKDW 120 Query: 121 AWCRQQNTMGAILENASDNIAQLAVQGPKATEVMQRLTDIDLNEITYYTFKVGSFAGCPD 180 WC NT GA LEN+SDN+AQLAVQGPKA +Q+LTDIDL+ I YYTF VG FAG + Sbjct: 121 NWCVSHNTEGAELENSSDNMAQLAVQGPKAILALQKLTDIDLSAIPYYTFTVGRFAGKEN 180 Query: 181 VIISATGYTGAGGFELYFYPQYAQKIWDALFEAGKPEGIKPAGLGARDTLRLEMGFCLYG 240 VIIS TGYTGAGGFELYFYP A+ IW A+FEAG+ GIKP GLGARDTLRLEMGFCLYG Sbjct: 181 VIISNTGYTGAGGFELYFYPDAAEAIWKAVFEAGEEFGIKPVGLGARDTLRLEMGFCLYG 240 Query: 241 NDICDTTSPIEAGLGWITKFTDDKMDMPSRKIMEEQKAGGLKRKLVAFELKDKGIPRQHY 300 ND+ D TSPIEAGLGWITKF + K + +R ++E+QK+ G RKLV FE+ D+GIPR Y Sbjct: 241 NDLDDKTSPIEAGLGWITKFVEGK-EFINRPMLEKQKSEGTTRKLVGFEMIDRGIPRHGY 299 Query: 301 EIANAEGQIIGEVTSGTMSPCLKKGIGMGYVATEFSKVGTELGIMVRGRQLKAEIVKPPF 360 E+ N EG+ IG VTSGTMSP K GIGMGYV E++KVGTE+ I +RGR+LKA +VKPPF Sbjct: 300 ELVNEEGEGIGVVTSGTMSPTRKIGIGMGYVKPEYAKVGTEICIDMRGRKLKAIVVKPPF 359 Query: 361 RK 362 RK Sbjct: 360 RK 361 Lambda K H 0.320 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 506 Number of extensions: 20 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 362 Length of database: 361 Length adjustment: 29 Effective length of query: 333 Effective length of database: 332 Effective search space: 110556 Effective search space used: 110556 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate 354110 BT4584 (putative aminomethyltransferase (NCBI ptt file))
to HMM TIGR00528 (gcvT: glycine cleavage system T protein (EC 2.1.2.10))
../bin/blast/fastacmd -i /tmp/list.29399.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.29399.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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