Align dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate 349837 BT0309 Dihydrolipoamide dehydrogenase (NCBI ptt file)
Query= BRENDA::Q8VPK7 (567 letters) >FitnessBrowser__Btheta:349837 Length = 447 Score = 298 bits (762), Expect = 4e-85 Identities = 180/451 (39%), Positives = 259/451 (57%), Gaps = 14/451 (3%) Query: 112 FDIVVIGGGPAGYVAAIKAAQFGGKVALVEKSELGGTCLNRGCIPTKTYLHNAEIIENIG 171 FDI +IGGGPAGY AA +A G + L EK +GG CLN GCIPTKT L++A+I+++I Sbjct: 3 FDIAIIGGGPAGYTAAERAGANGLRAVLFEKKAIGGVCLNEGCIPTKTLLYSAKILDSIK 62 Query: 172 HAANRGIVIENPNFTVDMEKLLETKSKVVNTLVGGVAGLLRSYGVTVHKGIGTITKDKNV 231 A+ GI E+P+F D+ K++ K K V L GGV + SYGVT+ + I ++N Sbjct: 63 SASKYGISAESPSF--DLTKIMSRKEKTVKMLTGGVKMTVNSYGVTIVEKEAFIEGEENG 120 Query: 232 LVN---GSELLETKKIILAGGSKVNKINVPGMESPLVMTSDDILEMNEVPESLVIIGGGV 288 L+ E E K +++ GS +PG+ TS + LE+ E+PE+LV+IGGGV Sbjct: 121 LIRIICDGERYEVKYLLVCTGSDTVIPPIPGLSEVSYWTSKEALEIKELPETLVVIGGGV 180 Query: 289 VGIELGQAFMTFGSKVTVIEMMDRIVPAMDVEVSKNLRLILERKGMTILTGTKLQEIIEE 348 +G+E F + G KV V+EMM I+ MD E S LR+ ++G+T TK+ E+ + Sbjct: 181 IGMEFASFFNSMGVKVHVVEMMPEILGVMDKETSSMLRMEYAKRGVTFYLNTKVIEVKPD 240 Query: 349 NGQLRIKVEGKDDII-ASKALLSIGRMPDLEGIG--EVEFELDRGCIKVTEYMETSVPGI 405 + I+ +GK I K LLS+GR ++ +G ++ EL R +KV EY++TS PG+ Sbjct: 241 G--VVIEKDGKASTIKTEKILLSVGRKANITNVGLDKLNIELHRNGVKVDEYLQTSHPGV 298 Query: 406 YAPGDINGTKMLAHAAFRMGEVSAENALKGNHAVAKLNLTPAAIYTLPEVAAVGLTEEQ- 464 YA GDI G +LAH A R EV A N + G N P +YT PEVA VG TEE+ Sbjct: 299 YACGDITGYSLLAHTAIREAEV-AINHILGVEDRMNYNSVPGVVYTNPEVAGVGKTEEEL 357 Query: 465 AREKYDVAIGKFNFAANGRAIA-SDAAQGFVKVIADKKYGEILGVHIIGPAAAELINEAS 523 ++ + K A +GR +A ++ G K+I D+ I+G H++G A+ELI A Sbjct: 358 TKQGIPYRVTKLPMAYSGRFVAENEQVNGICKLILDEA-DHIIGCHMLGNPASELIVIAG 416 Query: 524 SIIEMEITVEEMLKTIHGHPTYSEVMYEAFA 554 I+ TVEE K + HPT E+ +E + Sbjct: 417 IAIQKGYTVEEFQKNVFPHPTVGEIYHEVLS 447 Lambda K H 0.314 0.135 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 622 Number of extensions: 32 Number of successful extensions: 8 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 567 Length of database: 447 Length adjustment: 34 Effective length of query: 533 Effective length of database: 413 Effective search space: 220129 Effective search space used: 220129 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 52 (24.6 bits)
Align candidate 349837 BT0309 (Dihydrolipoamide dehydrogenase (NCBI ptt file))
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.13287.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13287.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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