Align Acetaldehyde dehydrogenase; Acetaldehyde dehydrogenase [acetylating]; EC 1.2.1.10 (characterized)
to candidate H281DRAFT_01665 H281DRAFT_01665 acetaldehyde dehydrogenase
Query= SwissProt::Q52060 (312 letters) >FitnessBrowser__Burk376:H281DRAFT_01665 Length = 320 Score = 432 bits (1110), Expect = e-126 Identities = 221/312 (70%), Positives = 261/312 (83%), Gaps = 3/312 (0%) Query: 1 MNQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGV 60 MN+K+KVAIIG GNIGTDLMIKV+RN+++LEM AMVG+D SDGLARA+RMGV TT G+ Sbjct: 1 MNEKVKVAIIGPGNIGTDLMIKVMRNSQHLEMAAMVGVDPKSDGLARAERMGVATTAEGI 60 Query: 61 EGLIKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIGPYCVPVVNLEE 120 +GL+KL F +ID VFDATSASAH + +L+ K G+++IDLTPAA+GPY +P +NLE Sbjct: 61 DGLLKLDVFKNIDIVFDATSASAHKHHNDVLQ--KHGVQVIDLTPAAVGPYVIPAINLEA 118 Query: 121 HLGKLNVNMVTCGGQATIPMVAAVSRVAKVHYAEIVASISSKSAGPGTRANIDEFTETTS 180 N+NMVTCGGQATIP+VAAVSRVAKVHYAEIVASISS+SAGPGTRANIDEFTETT Sbjct: 119 ENAS-NMNMVTCGGQATIPIVAAVSRVAKVHYAEIVASISSRSAGPGTRANIDEFTETTR 177 Query: 181 KAIEVIGGAAKGKAIIIMNPAEPPLIMRDTVYVLSAAADQAAVAASVAEMVQAVQAYVPG 240 AIE +GGA +GKAII++NPAEPPLIMRDTV+VLS D AV SVA+M+ +VQAYVPG Sbjct: 178 SAIETLGGATRGKAIIVLNPAEPPLIMRDTVFVLSDLVDVNAVEDSVAQMITSVQAYVPG 237 Query: 241 YRLKQQVQFDVIPESAPLNIPGLGRFSGLKTSVFLEVEGAAHYLPAYAGNLDIMTSAALA 300 YRLKQ++QFD++ PLN+PGLG GLKTSVFLEVEGAAHYLP+YAGNLDIMTSAALA Sbjct: 238 YRLKQKIQFDIVSPEKPLNVPGLGVKHGLKTSVFLEVEGAAHYLPSYAGNLDIMTSAALA 297 Query: 301 TAERMAQSMLNA 312 + MA+ L A Sbjct: 298 CGDMMARRRLAA 309 Lambda K H 0.317 0.132 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 339 Number of extensions: 5 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 312 Length of database: 320 Length adjustment: 27 Effective length of query: 285 Effective length of database: 293 Effective search space: 83505 Effective search space used: 83505 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate H281DRAFT_01665 H281DRAFT_01665 (acetaldehyde dehydrogenase)
to HMM TIGR03215 (acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10))
../bin/blast/fastacmd -i /tmp/list.25810.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.25810.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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