Align β-ketoadipyl-CoA thiolase (EC 2.3.1.174; EC 2.3.1.223) (characterized)
to candidate H281DRAFT_01504 H281DRAFT_01504 3-oxoadipyl-CoA thiolase
Query= metacyc::MONOMER-15952 (401 letters) >FitnessBrowser__Burk376:H281DRAFT_01504 Length = 400 Score = 570 bits (1470), Expect = e-167 Identities = 287/401 (71%), Positives = 336/401 (83%), Gaps = 1/401 (0%) Query: 1 MNEALIIDAVRTPIGRYAGALASVRADDLGAIPLKALIARHPQLDWSAVDDVIYGCANQA 60 M EA + DA+RTPIGRYAG+L+SVRADDLGA+PLKAL+ R+ +DWS +DDVIYGCANQA Sbjct: 1 MTEAFLCDAIRTPIGRYAGSLSSVRADDLGAVPLKALMERNKNVDWSVIDDVIYGCANQA 60 Query: 61 GEDNRNVARMAALLAGLPVSVPGTTLNRLCGSGLDAVGSAARALRCGEAGLMLAGGVESM 120 GEDNRNVARM+ LLAGLP VPG+T+NRLCGSG+DAVG AARA++ GEA LM+AGGVESM Sbjct: 61 GEDNRNVARMSLLLAGLPKDVPGSTVNRLCGSGMDAVGIAARAIKSGEAALMVAGGVESM 120 Query: 121 SRAPFVMGKSEQAFGRSAEIFDTTIGWRFVNKLMQQGFGIDSMPETAENVAAQFNISRAD 180 SRAPFVMGK+ AF R A+I+DTTIGWRFVN LM+Q +G+DSMPET ENVA +NISRAD Sbjct: 121 SRAPFVMGKATSAFSRQADIYDTTIGWRFVNPLMKQMYGVDSMPETGENVATDYNISRAD 180 Query: 181 QDAFALRSQHKAAAAIANGRLAKEIVAVEIAQRKGPAKIVEHDEHPRGDTTLEQLAKLGT 240 QDAFALRSQ KAA A +G LA+EIV V IAQ+KG V DEHPR +T+LE LAKL Sbjct: 181 QDAFALRSQQKAARAQKDGTLAQEIVGVTIAQKKGDPITVSQDEHPR-ETSLETLAKLKG 239 Query: 241 PFRQGGSVTAGNASGVNDGACALLLASSEAAQRHGLKARARVVGMATAGVEPRIMGIGPV 300 R G+VTAGNASGVNDGA ALLLA+ E A+R GL RARV+G+ATAGV PRIMG+GP Sbjct: 240 VVRPDGTVTAGNASGVNDGAAALLLANEETAKRFGLTPRARVLGIATAGVAPRIMGMGPA 299 Query: 301 PATRKVLELTGLALADMDVIELNEAFAAQGLAVLRELGLADDDERVNPNGGAIALGHPLG 360 PA +K++ + + DVIELNEAFA+QG+AVLR LG+ADDD RVNPNGGAIALGHPLG Sbjct: 300 PAAQKLMARLNMTIDQFDVIELNEAFASQGIAVLRTLGVADDDARVNPNGGAIALGHPLG 359 Query: 361 MSGARLVTTALHELEERQGRYALCTMCIGVGQGIALIIERI 401 MSGARLVTTA+++L+ QGR+ALCTMCIGVGQGIA+ IER+ Sbjct: 360 MSGARLVTTAMYQLQRTQGRFALCTMCIGVGQGIAIAIERV 400 Lambda K H 0.319 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 549 Number of extensions: 12 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 401 Length of database: 400 Length adjustment: 31 Effective length of query: 370 Effective length of database: 369 Effective search space: 136530 Effective search space used: 136530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate H281DRAFT_01504 H281DRAFT_01504 (3-oxoadipyl-CoA thiolase)
to HMM TIGR02430 (pcaF: 3-oxoadipyl-CoA thiolase (EC 2.3.1.174))
../bin/blast/fastacmd -i /tmp/list.24443.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.24443.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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