Align Probable propionate kinase; EC 2.7.2.15 (characterized)
to candidate H281DRAFT_02796 H281DRAFT_02796 acetate kinase
Query= SwissProt::P74879 (404 letters) >FitnessBrowser__Burk376:H281DRAFT_02796 Length = 385 Score = 242 bits (618), Expect = 1e-68 Identities = 157/389 (40%), Positives = 207/389 (53%), Gaps = 28/389 (7%) Query: 3 YKIMAINAGSSSLKFQLLEMPQGD--MLCQGLIERIGMADAQVTIKTHSQKW--QETVPV 58 + I+ +N+GSSSLKF L E D +L +G + IG D ++ I + QE + Sbjct: 10 HTILVLNSGSSSLKFGLFEHSGDDESLLLEGSAQGIGRRDGRLRIAAPDGRVLVQEEHVL 69 Query: 59 ADHRDAVTLLLEKLLGYQIINSLRDIDGVGHRVAHGGEFFKDSTLVTDETLAQIERLAEL 118 DA L+KL VGHRV HGG + +T E +++ Sbjct: 70 ESQTDA----LQKLSTVLAQQHHEQPTAVGHRVVHGGPHLRSHQRLTPEVRRRLQDAVHF 125 Query: 119 APLHNPVNALGIHVFRQLLPDAPSVAVFDTAFHQTLDEPAYIYPLPWHYYAELGIRRYGF 178 APLH P I +++ A A FDTAFH TL A LP Y+E G+ RYGF Sbjct: 126 APLHIPPALDLIDEAQKIFGGAQHFACFDTAFHATLPPRAAQLALP-RRYSEAGVIRYGF 184 Query: 179 HGTSHKYVSGVLAEKLGVPLSALRVICCHLGNGSSICAIKNGRSVNTSMGFTPQSGVMMG 238 HG S++ L +LG L A RV+C HLGNGSS+CA+++GRSV+TSMG TP GV MG Sbjct: 185 HGLSYES----LVAQLGATLPA-RVVCAHLGNGSSVCALRDGRSVDTSMGMTPTGGVPMG 239 Query: 239 TRSGDIDPSILPWIAQRESKTPQQLNQLLNNESGLLGVSGVSSDYRDVEQAANTGNRQAK 298 TR GD+DP +L ++ + E L LLN SGL G + SD + +EQ A G+ A Sbjct: 240 TRCGDLDPGVLLYLMRVEKLDANGLETLLNRHSGLAGYADGESDMQALEQRAAAGDPHAS 299 Query: 299 LALTLFAERIRATIGSYIMQMGGLDALVFTGGIGENSARARSAVCHNLQFLGLAVDEEKN 358 LAL FA +R TIG Y +GG+D LVFTGGIGE+S + R +C L FLGL Sbjct: 300 LALDAFATAVRKTIGGYAALLGGIDLLVFTGGIGEHSVQMRKRICEGLSFLGL------- 352 Query: 359 QRNATFIQTENALVKVAVINTNEELMIAQ 387 +A KV V++T EE IA+ Sbjct: 353 -------HEGDASGKVRVLHTEEEKQIAR 374 Lambda K H 0.319 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 363 Number of extensions: 15 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 404 Length of database: 385 Length adjustment: 31 Effective length of query: 373 Effective length of database: 354 Effective search space: 132042 Effective search space used: 132042 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate H281DRAFT_02796 H281DRAFT_02796 (acetate kinase)
to HMM TIGR00016 (ackA: acetate kinase (EC 2.7.2.1))
../bin/blast/fastacmd -i /tmp/list.2205.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.2205.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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