Align Malate synthase G (EC 2.3.3.9) (characterized)
to candidate H281DRAFT_00963 H281DRAFT_00963 malate synthase
Query= reanno::psRCH2:GFF353 (726 letters) >FitnessBrowser__Burk376:H281DRAFT_00963 Length = 723 Score = 973 bits (2516), Expect = 0.0 Identities = 479/730 (65%), Positives = 588/730 (80%), Gaps = 12/730 (1%) Query: 1 MTERVQVGGLQVAKVLYDFVNNEAIPGTGVDAAAFWAGADSVIHDLAPKNRALLAKRDDL 60 MT+ GGLQVA L FV EA+PGTG+D+AAFW+G D+++H+LAPKN ALLA+RD L Sbjct: 1 MTQMNPRGGLQVAANLDQFVETEALPGTGIDSAAFWSGFDALVHELAPKNHALLAERDRL 60 Query: 61 QAQIDAWHQARAGQAHDAVAYKSFLQEIGYLLPEAEDFQATTENVDEEIARMAGPQLVVP 120 Q ++D WH+A G D AY++FL+ IGY++P +ATT+ VD EIA AGPQLVVP Sbjct: 61 QTELDNWHRANPGPVRDLRAYRAFLEGIGYIVPAPASVKATTDQVDTEIAEQAGPQLVVP 120 Query: 121 IMNARFALNAANARWGSLYDALYGTDAISEADGASKGPGYNEIRGNKVIAYARNFLNEAA 180 + N R+ALNAANARWGSLYDALYGTDAI E +GA + +N +RG VIAYAR FL+EAA Sbjct: 121 LSNQRYALNAANARWGSLYDALYGTDAIPETNGADRQKTFNPVRGAAVIAYARKFLDEAA 180 Query: 181 PLETGSHVDSTGYRIEGGKLVVSLKDGSTTGLKNPAQLQGFQGEASAPIAVLLKNNGIHF 240 PL GSH D+T Y +EGGKLVV+LK+G T+ LK PAQ G+QG+ASAP AVLLK+NG+HF Sbjct: 181 PLANGSHADATRYSVEGGKLVVALKNG-TSELKTPAQFVGYQGDASAPSAVLLKHNGLHF 239 Query: 241 EIQIDPASPIGQTDAAGVKDILMESALTTIMDCEDSIAAVDADDKTVVYRNWLGLMKGDL 300 EIQID IG+TDAA VKD+++E+A++TI+DCEDS+AAVDADDK +YRNWLGLM GDL Sbjct: 240 EIQIDANDSIGKTDAAHVKDVVVEAAVSTIIDCEDSVAAVDADDKVQLYRNWLGLMNGDL 299 Query: 301 VEELEKGGKRITRAMNPDRVYTKADGNGELTLHGRSLLFIRNVGHLMTNDAILDKEGNEV 360 EE+ K GK TR +N DRVY A+G + LHGRSLLFIRNVGHLMTN A+L K+G E+ Sbjct: 300 TEEVTKNGKTFTRRLNDDRVYVAANGTAPVVLHGRSLLFIRNVGHLMTNPAVLTKDGAEI 359 Query: 361 PEGIMDGLFTSLIAVHNLNGNTSRKNTRTGSMYIVKPKMHGPEEVAFATELFGRVEDVLG 420 PEGI+D + T+L A+H+ + N+RTGS+YIVKPKMHGP EVAFA+ELF RVED+L Sbjct: 360 PEGILDAVMTTLCALHD---RKHKLNSRTGSIYIVKPKMHGPAEVAFASELFARVEDLLK 416 Query: 421 LPRNTLKVGIMDEERRTTINLKACIKEARERVVFINTGFLDRTGDEIHTSMEAGPMVRKA 480 LPRNT+K+GIMDEERRT++NL ACI +A ERV FINTGFLDRTGDE+H++MEAGPM+RK Sbjct: 417 LPRNTIKMGIMDEERRTSVNLLACIAQASERVAFINTGFLDRTGDEMHSAMEAGPMMRKG 476 Query: 481 AMKAEKWISAYENNNVDVGLACGLQGKAQIGKGMWAMPDLMAAMLEQKVGHPMAGANTAW 540 MK+ WI+AYE +NV VGL GL+G++QIGKGMWAMPDLM AMLEQK+ HP AGANTAW Sbjct: 477 DMKSSAWIAAYERSNVLVGLHAGLRGRSQIGKGMWAMPDLMHAMLEQKIAHPKAGANTAW 536 Query: 541 VPSPTAATLHAMHYHKIDVQARQVELAKREKASI-----DDILTIPLAQDTNWSEEEKRN 595 VPSPTAATLHA+HYH+IDVQA Q +L + + AS+ D +LTIP+ + NWS +E R Sbjct: 537 VPSPTAATLHALHYHQIDVQAVQQQLERTDYASVRDELLDGLLTIPVVETANWSADEIRA 596 Query: 596 ELDNNSQGILGYMVRWVEQGVGCSKVPDINDIALMEDRATLRISSQHVANWMRHGVVTKD 655 ELDNN+QGILGY+VRW++QGVGCSKVPDI++I LMEDRATLRISSQH+ANW+ HGVVT++ Sbjct: 597 ELDNNAQGILGYVVRWIDQGVGCSKVPDIHNIGLMEDRATLRISSQHIANWLYHGVVTRE 656 Query: 656 QVVESLKRMAPVVDRQNQGDPLYRPMAPDFDNSVAFQAALELVLEGTKQPNGYTEPVLHR 715 QV E+ KRMA VVD+QN GDP YRPMAP FD ++AF+AA LV EG +QP+GYTEP+LH+ Sbjct: 657 QVEETFKRMAQVVDQQNAGDPNYRPMAPSFD-TIAFKAAQALVFEGRQQPSGYTEPLLHK 715 Query: 716 RRREFKAKNG 725 R + KNG Sbjct: 716 FR--LQVKNG 723 Lambda K H 0.316 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1454 Number of extensions: 58 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 726 Length of database: 723 Length adjustment: 40 Effective length of query: 686 Effective length of database: 683 Effective search space: 468538 Effective search space used: 468538 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 55 (25.8 bits)
Align candidate H281DRAFT_00963 H281DRAFT_00963 (malate synthase)
to HMM TIGR01345 (glcB: malate synthase G (EC 2.3.3.9))
../bin/blast/fastacmd -i /tmp/list.594.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.594.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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