Align 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) (characterized)
to candidate H281DRAFT_03179 H281DRAFT_03179 4-aminobutyrate aminotransferase apoenzyme
Query= BRENDA::Q0K2K2 (423 letters) >FitnessBrowser__Burk376:H281DRAFT_03179 Length = 429 Score = 601 bits (1549), Expect = e-176 Identities = 293/423 (69%), Positives = 343/423 (81%) Query: 1 MTMKNLELNQRRTLATPRGVGVMCDFYADRAENATLWDVEGRAYTDFAAGIAVLNTGHRH 60 M +KN EL R+ ATPRGVGVMCDFYA+RA+NA LWDVEGR + DFAAGIAV NTGHRH Sbjct: 1 MNLKNAELKSRKDAATPRGVGVMCDFYAERAQNAELWDVEGRRFIDFAAGIAVCNTGHRH 60 Query: 61 PRVMQAIAAQLERFTHTAYQIVPYQGYVTLAERINALVPIQGLNKTALFTTGAEAVENAI 120 P+++ AI QL+RFTHTAYQIVPY YV LAE++N P KTA FTTGAEAVENAI Sbjct: 61 PKIVAAIRDQLDRFTHTAYQIVPYASYVELAEKLNERAPGDHPKKTAFFTTGAEAVENAI 120 Query: 121 KIARAHTGRPGVIAFSGAFHGRTLLGMALTGKVAPYKIGFGPFPSDIYHAPFPSALHGVS 180 KIARA TGRPGVIAF+G FHGRTL+GMALTGKVAPYK GFGPFPSD++HAPFP+ LHGVS Sbjct: 121 KIARAATGRPGVIAFTGGFHGRTLMGMALTGKVAPYKAGFGPFPSDVFHAPFPNPLHGVS 180 Query: 181 TERALQALEGLFKTDIDPARVAAIIVEPVQGEGGFQAAPADFMRGLRAVCDQHGIVLIAD 240 T +L+A+E LFK DIDP RVAAII EPVQGEGGF APA+F+R LR +C++HGI+LIAD Sbjct: 181 TADSLKAIEFLFKADIDPKRVAAIIFEPVQGEGGFYPAPAEFVRALRKLCNEHGILLIAD 240 Query: 241 EVQTGFGRTGKMFAMSHHDVEPDLITMAKSLAGGMPLSAVSGRAAIMDAPLPGGLGGTYA 300 EVQTGF RTGK+FAM H+DV PDL+T+AKSLAGGMPLS V GRA +MDA PGGLGGTYA Sbjct: 241 EVQTGFARTGKLFAMHHYDVVPDLMTVAKSLAGGMPLSGVIGRADVMDAAAPGGLGGTYA 300 Query: 301 GNPLAVAAAHAVIDVIEEEKLCERSASLGQQLREHLLAQRKHCPAMAEVRGLGSMVAAEF 360 GNPLAVAAA AV+D+I+EEKLCER+ LG +++ L+A + P +A+VRG G MVA EF Sbjct: 301 GNPLAVAAALAVLDIIDEEKLCERATILGDRVKAKLIALQNEAPQIADVRGPGGMVAVEF 360 Query: 361 CDPATGQPSAEHAKRVQTRALEAGLVLLTCGTYGNVIRFLYPLTIPQAQFDAALAVLTQA 420 C P + +P AE KRVQTRAL+ GL+LL CG Y NV+RFL+PLTI FD ALA+L Sbjct: 361 CKPGSTEPDAEFTKRVQTRALKRGLLLLVCGVYSNVVRFLFPLTIEDTVFDEALAILEDV 420 Query: 421 LAE 423 + + Sbjct: 421 IKD 423 Lambda K H 0.321 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 645 Number of extensions: 18 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 423 Length of database: 429 Length adjustment: 32 Effective length of query: 391 Effective length of database: 397 Effective search space: 155227 Effective search space used: 155227 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (24.3 bits)
Align candidate H281DRAFT_03179 H281DRAFT_03179 (4-aminobutyrate aminotransferase apoenzyme)
to HMM TIGR00700 (gabT: 4-aminobutyrate transaminase (EC 2.6.1.19))
../bin/blast/fastacmd -i /tmp/list.4348.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4348.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.