Align L-asparaginase (EC 3.5.1.1) (characterized)
to candidate H281DRAFT_00783 H281DRAFT_00783 L-asparaginase
Query= reanno::BFirm:BPHYT_RS08815 (347 letters) >FitnessBrowser__Burk376:H281DRAFT_00783 Length = 361 Score = 589 bits (1518), Expect = e-173 Identities = 308/347 (88%), Positives = 321/347 (92%), Gaps = 4/347 (1%) Query: 1 MNTSTSSSAMPSDEGAMPLLPRIVVLATGGTIAGAAASATNTSGYQAGVIGVEQLLAVVP 60 MN TSSS+ GA LLPRI VLATGGTIAGAAA ATNTSGYQAGV+GVEQLLAVVP Sbjct: 19 MNAQTSSSS----PGAAALLPRIAVLATGGTIAGAAADATNTSGYQAGVVGVEQLLAVVP 74 Query: 61 ALSTVARMEREQIASVDSKDMAMPLWTTLAQRINTLLADDEIDGVVVTHGTDTLEETAYL 120 ALSTVAR+ EQIASVDSKDMAMPLWT LAQRIN LLADD+IDGVVVTHGTDTLEETAYL Sbjct: 75 ALSTVARIAPEQIASVDSKDMAMPLWTALAQRINALLADDDIDGVVVTHGTDTLEETAYL 134 Query: 121 LHLTIKSDKPVVLTAAMRPASALSADGPLNLLNAVTVAAQASARGQGVLVAFNNRIHSAR 180 LHLT+KSDKPVVLTAAMRPASALSADGPLNLLNAVTVAA A ARGQGVLVAFNN+IHSAR Sbjct: 135 LHLTVKSDKPVVLTAAMRPASALSADGPLNLLNAVTVAANAGARGQGVLVAFNNKIHSAR 194 Query: 181 DVVKTSTYAVDAFHSPEIGALGWVQDGRVEFQRGVVRPHTLATEFVIGAQWPHVEIVLSY 240 DVVKTSTYAVDAF SPE+GALGWVQDGRVEFQR VVRPHTL+TEFVIGA WPHV+IV SY Sbjct: 195 DVVKTSTYAVDAFQSPEVGALGWVQDGRVEFQRSVVRPHTLSTEFVIGANWPHVDIVASY 254 Query: 241 AGVSRIAVDALVAAGVRGIVVAGTGNGSIHASVQQALADAASQGVAVVRASRVGSGHVMR 300 AGVSRIAVDALV AGVRGIVVAGTGNGSIHAS+ QALADAASQGVAVVR+SRVGSGHVMR Sbjct: 255 AGVSRIAVDALVTAGVRGIVVAGTGNGSIHASLTQALADAASQGVAVVRSSRVGSGHVMR 314 Query: 301 NGAAADDALGFVSAGSLNPYKARVLLMLALAAGATGPMALQKIFDTY 347 NGAAADDALGFVSAGSLNPYKARVLLM+ALAAG GP+ALQK FDTY Sbjct: 315 NGAAADDALGFVSAGSLNPYKARVLLMVALAAGGAGPVALQKAFDTY 361 Lambda K H 0.317 0.129 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 424 Number of extensions: 7 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 347 Length of database: 361 Length adjustment: 29 Effective length of query: 318 Effective length of database: 332 Effective search space: 105576 Effective search space used: 105576 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate H281DRAFT_00783 H281DRAFT_00783 (L-asparaginase)
to HMM TIGR00520 (L-asparaginase, type II (EC 3.5.1.1))
../bin/blast/fastacmd -i /tmp/list.3540.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3540.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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