Align Isocitrate dehydrogenase [NADP]; IDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 (characterized)
to candidate H281DRAFT_03806 H281DRAFT_03806 isocitrate dehydrogenase
Query= SwissProt::P16100 (741 letters) >FitnessBrowser__Burk376:H281DRAFT_03806 Length = 742 Score = 1209 bits (3128), Expect = 0.0 Identities = 606/742 (81%), Positives = 663/742 (89%), Gaps = 1/742 (0%) Query: 1 MSTP-KIIYTLTDEAPALATYSLLPIIKAFTGSSGIAVETRDISLAGRLIATFPEYLTDT 59 MSTP KIIYTLTDEAPALATYSLLPI+KAFT SS + VETRDISLAGR+IA FP+YLT Sbjct: 1 MSTPPKIIYTLTDEAPALATYSLLPIVKAFTRSSDVIVETRDISLAGRIIAAFPDYLTAE 60 Query: 60 QKISDDLAELGKLATTPDANIIKLPNISASVPQLKAAIKELQQQGYKLPDYPEEPKTDTE 119 QK SDDLAELG L T P+ANIIKLPNISASVPQLKAAI EL+ QGYKLP YP+ T+TE Sbjct: 61 QKGSDDLAELGGLTTRPEANIIKLPNISASVPQLKAAITELRDQGYKLPAYPDVATTETE 120 Query: 120 KDVKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWSADSKSHVAHMDNG 179 KDVKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWSADSKSHVAHM G Sbjct: 121 KDVKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWSADSKSHVAHMSGG 180 Query: 180 DFYGSEKAALIGAPGSVKIELIAKDGSSTVLKAKTSVQAGEIIDSSVMSKNALRNFIAAE 239 DFYGSEK+ALI A G+VKIEL A DG+ TVLK KT VQAGEIID+SV+SKNALR+FI AE Sbjct: 181 DFYGSEKSALIAAAGAVKIELTAADGTKTVLKEKTPVQAGEIIDASVLSKNALRSFIEAE 240 Query: 240 IEDAKKQGVLLSVHLKATMMKVSDPIMFGQIVSEFYKDALTKHAEVLKQIGFDVNNGIGD 299 I DAK++GVL SVHLKATMMKVSDPI+FG +VS FYKD LTKHA+ L Q GF+ NNGIGD Sbjct: 241 IADAKRKGVLFSVHLKATMMKVSDPIIFGHVVSVFYKDVLTKHADALAQAGFNPNNGIGD 300 Query: 300 LYARIKTLPEAKQKEIEADIQAVYAQRPQLAMVNSDKGITNLHVPSDVIVDASMPAMIRD 359 LYAR+K LP +IEADI+A Y QRPQLAMVNSDKGIT+LHVPSDVIVDASMPAMIR+ Sbjct: 301 LYARLKDLPAETAAQIEADIKAQYEQRPQLAMVNSDKGITSLHVPSDVIVDASMPAMIRE 360 Query: 360 SGKMWGPDGKLHDTKAVIPDRCYAGVYQVVIEDCKQHGAFDPTTMGSVPNVGLMAQKAEE 419 SGKMWG DG LHD KAVIPDRCYAGVYQ VIEDCK++GAFDP TMG+VPNVGLMAQ AEE Sbjct: 361 SGKMWGADGALHDAKAVIPDRCYAGVYQAVIEDCKKNGAFDPVTMGTVPNVGLMAQAAEE 420 Query: 420 YGSHDKTFQIPADGVVRVTDESGKLLLEQSVEAGDIWRMCQAKDAPIQDWVKLAVNRARA 479 YGSHDKTFQIPA+GVVRVTD SG +L+EQ+VEAGDIWRMCQ KDAP+QDWVKLAVNRARA Sbjct: 421 YGSHDKTFQIPANGVVRVTDASGAVLIEQAVEAGDIWRMCQTKDAPVQDWVKLAVNRARA 480 Query: 480 TNTPAVFWLDPARAHDAQVIAKVERYLKDYDTSGLDIRILSPVEATRFSLARIREGKDTI 539 TNTPAVFWLD ARAHDAQ+I KVE+YLKD+DT+GLDIRI++PVEAT+FS+ RIR GKDTI Sbjct: 481 TNTPAVFWLDAARAHDAQIIKKVEQYLKDHDTNGLDIRIMTPVEATKFSVERIRAGKDTI 540 Query: 540 SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMSGGGLFETGAGGSAPKHVQQFLEEGYL 599 SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLM+GGG+FETGAGGSAPKHVQQ +EEG+L Sbjct: 541 SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQLVEEGFL 600 Query: 600 RWDSLGEFLALAASLEHLGNAYKNPKALVLASTLDQATGKILDNNKSPARKVGEIDNRGS 659 RWDSLGEFLALAASLEHL +AY NPKA VLA TLDQATGK LDN+KSPARKVG +DNRGS Sbjct: 601 RWDSLGEFLALAASLEHLSSAYHNPKAQVLAKTLDQATGKFLDNDKSPARKVGGLDNRGS 660 Query: 660 HFYLALYWAQALAAQTEDKELQAQFTGIAKALTDNETKIVGELAAAQGKPVDIAGYYHPN 719 HFYLA+YWA+ALAAQTED LQAQF G+AKA+ DNE KI+ EL AAQGKPVDI GYY PN Sbjct: 661 HFYLAMYWAEALAAQTEDAALQAQFAGVAKAMADNEAKILEELRAAQGKPVDIGGYYRPN 720 Query: 720 TDLTSKAIRPSATFNAALAPLA 741 +LTSKA+RPSAT N + +A Sbjct: 721 VELTSKAMRPSATLNEIVDSIA 742 Lambda K H 0.315 0.131 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1553 Number of extensions: 47 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 741 Length of database: 742 Length adjustment: 40 Effective length of query: 701 Effective length of database: 702 Effective search space: 492102 Effective search space used: 492102 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 55 (25.8 bits)
Align candidate H281DRAFT_03806 H281DRAFT_03806 (isocitrate dehydrogenase)
to HMM TIGR00178 (isocitrate dehydrogenase, NADP-dependent (EC 1.1.1.42))
../bin/blast/fastacmd -i /tmp/list.28544.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.28544.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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