Align Ribokinase (EC 2.7.1.15) (characterized)
to candidate H281DRAFT_05229 H281DRAFT_05229 ribokinase
Query= reanno::pseudo3_N2E3:AO353_20835 (305 letters) >FitnessBrowser__Burk376:H281DRAFT_05229 Length = 307 Score = 368 bits (945), Expect = e-107 Identities = 200/299 (66%), Positives = 232/299 (77%), Gaps = 1/299 (0%) Query: 3 AKVVVVGSLNMDLVTRAQRLPHAGETLHGESFATVSGGKGANQAVASARLGAQVSMIGCV 62 A+V VVGSLNMDLV RA RLPH GETL G +FA V+GGKG NQAVA+ARLGAQVSM+GCV Sbjct: 8 ARVAVVGSLNMDLVARAPRLPHPGETLAGRTFAQVAGGKGGNQAVAAARLGAQVSMLGCV 67 Query: 63 GDDAYGEQLRAALLAEQIDCQALTSVEGSSGVALIVVDDNSQNAIVIVAGANGQLTPGMV 122 G DA G QLRA L AE IDC A+ + ++GVALIVVDD SQNAIVIVAG+NG++TP + Sbjct: 68 GADANGAQLRAGLEAEGIDCAAVETGREATGVALIVVDDASQNAIVIVAGSNGEVTPETI 127 Query: 123 AGFDAVLAAADVIICQLEVPMHTVGYVLKRGRELGKTVILNPAPATSPLPADWYSSIDYL 182 A +AVLAAADV+ICQLE P+ TV L R LGKTVILNPAPAT PLPA+W IDYL Sbjct: 128 ARHEAVLAAADVVICQLETPLDTVQAALATARRLGKTVILNPAPATGPLPAEWLPLIDYL 187 Query: 183 IPNESEASALSGLPVDSLESAELAASRLIAAGAGKVIITLGPQGSLFA-NGQSCEHFPAP 241 IPNE EA+ L+GLPV S E A AA+ L AAGA V++TLGP+G A G + + AP Sbjct: 188 IPNELEAATLTGLPVGSPEEAATAAAVLRAAGARNVLVTLGPRGVQAALEGAAPALYDAP 247 Query: 242 KVKSVDTTAAGDTFVGGFAAALAAGKSEVEAIRFGQVAAALSVTRAGAQPSIPSLSDVQ 300 KVK++DTTAAGDTF+GGFAA LA G S AIRF Q AAALSVTRAGAQPSIP+ ++V+ Sbjct: 248 KVKAIDTTAAGDTFIGGFAAQLAQGASVDAAIRFAQRAAALSVTRAGAQPSIPTWTEVE 306 Lambda K H 0.315 0.130 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 323 Number of extensions: 11 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 305 Length of database: 307 Length adjustment: 27 Effective length of query: 278 Effective length of database: 280 Effective search space: 77840 Effective search space used: 77840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 48 (23.1 bits)
Align candidate H281DRAFT_05229 H281DRAFT_05229 (ribokinase)
to HMM TIGR02152 (rbsK: ribokinase (EC 2.7.1.15))
../bin/blast/fastacmd -i /tmp/list.1932.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1932.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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