Align tartronate semialdehyde reductase 2 (characterized)
to candidate H281DRAFT_00785 H281DRAFT_00785 2-hydroxy-3-oxopropionate reductase
Query= ecocyc::G6278-MONOMER (292 letters) >FitnessBrowser__Burk376:H281DRAFT_00785 Length = 302 Score = 377 bits (968), Expect = e-109 Identities = 193/292 (66%), Positives = 233/292 (79%), Gaps = 3/292 (1%) Query: 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADEL-LSLGAVSVETARQVTEASDIIF 60 K+GFIGLGIMG MA NL + GH L V PV ++L S VS TA V +A+DI+ Sbjct: 3 KIGFIGLGIMGAHMARNLLKGGHTLFVNGAYPVPEDLGKSTNVVSDSTA--VAQAADIVI 60 Query: 61 IMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVS 120 IMVPDTP V VLF ++G GK ++DMSSISP++T+ FA+++N LG DYLDAPVS Sbjct: 61 IMVPDTPDVANVLFADDGVAAGLTAGKLVIDMSSISPLDTQAFAKKINALGVDYLDAPVS 120 Query: 121 GGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNI 180 GGE+GARE TL+IMVGG E F + KPLFEL+GKNI+L+G NG GQTCKVANQIIVALNI Sbjct: 121 GGEVGAREATLTIMVGGPEKAFAQAKPLFELMGKNISLIGDNGAGQTCKVANQIIVALNI 180 Query: 181 EAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLN 240 EAV+EALLFAS++GADP RVR+ALMGGFASSRILEVHGERM KRTFNPGF+I LHQKDLN Sbjct: 181 EAVAEALLFASRSGADPERVRKALMGGFASSRILEVHGERMTKRTFNPGFRIELHQKDLN 240 Query: 241 LALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMANHKLA 292 LAL A+ L + LP+TA+ Q+LF+ CAANGG DHSA+V+ALE+MAN+++A Sbjct: 241 LALDGARKLGIALPHTASAQQLFSVCAANGGKAWDHSAMVRALEIMANYEVA 292 Lambda K H 0.318 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 322 Number of extensions: 6 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 292 Length of database: 302 Length adjustment: 26 Effective length of query: 266 Effective length of database: 276 Effective search space: 73416 Effective search space used: 73416 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate H281DRAFT_00785 H281DRAFT_00785 (2-hydroxy-3-oxopropionate reductase)
to HMM TIGR01505 (2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60))
../bin/blast/fastacmd -i /tmp/list.11111.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11111.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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