Align Maleylacetoacetate isomerase (EC 5.2.1.2) (characterized)
to candidate H281DRAFT_01970 H281DRAFT_01970 maleylacetoacetate isomerase (EC 5.2.1.2)
Query= reanno::MR1:200836 (216 letters) >FitnessBrowser__Burk376:H281DRAFT_01970 Length = 214 Score = 245 bits (625), Expect = 5e-70 Identities = 125/218 (57%), Positives = 157/218 (72%), Gaps = 8/218 (3%) Query: 1 MILYGYWRSSAAYRVRIALNLKGVSAEQLSVHLVRDGGEQHKADYIALNPQELVPTLVVD 60 M LY Y+RSSA+YRVRIALN+K + E + VHLVRDGGEQ K +Y A+N +VPTL+ Sbjct: 1 MKLYSYFRSSASYRVRIALNVKNLPYEYVPVHLVRDGGEQLKPEYRAVNVDGIVPTLI-- 58 Query: 61 DEQDG-DALTQSLAIIEYLDELYPKTPLLPASALERAHVRAMALTIACEIHPLNNLRVLQ 119 DG + + QSLAIIEYL+E +P+ PLLP + +RA+VR++AL +ACEIHPLNNLRVL+ Sbjct: 59 ---DGHEVMPQSLAIIEYLEETHPEPPLLPKAPADRAYVRSLALQVACEIHPLNNLRVLK 115 Query: 120 YLTQKLTVNEEAKSAWYHHWVATGFTALETQLVR--HSGRYCFGDKVTIADLCLVPQVYN 177 YL L V +AK AWY HWV TGF LE L +G+ CFGD+ T+AD CL+PQV+N Sbjct: 116 YLKHTLRVENDAKDAWYRHWVDTGFATLEAHLASDGRTGKLCFGDEPTLADACLIPQVFN 175 Query: 178 AQRFNVDLTPYPNIMRVWAECNQLPAFADAAPERQADA 215 AQRFNVD + YP I R++ Q+ AFA AAP Q DA Sbjct: 176 AQRFNVDTSKYPTIQRIYDHAMQIDAFARAAPGVQPDA 213 Lambda K H 0.321 0.134 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 178 Number of extensions: 7 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 216 Length of database: 214 Length adjustment: 22 Effective length of query: 194 Effective length of database: 192 Effective search space: 37248 Effective search space used: 37248 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 45 (21.9 bits)
Align candidate H281DRAFT_01970 H281DRAFT_01970 (maleylacetoacetate isomerase (EC 5.2.1.2))
to HMM TIGR01262 (maiA: maleylacetoacetate isomerase (EC 5.2.1.2))
../bin/blast/fastacmd -i /tmp/list.22871.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.22871.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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