GapMind for catabolism of small carbon sources

 

Alignments for a candidate for maiA in Paraburkholderia bryophila 376MFSha3.1

Align Maleylacetoacetate isomerase (EC 5.2.1.2) (characterized)
to candidate H281DRAFT_01970 H281DRAFT_01970 maleylacetoacetate isomerase (EC 5.2.1.2)

Query= reanno::MR1:200836
         (216 letters)



>FitnessBrowser__Burk376:H281DRAFT_01970
          Length = 214

 Score =  245 bits (625), Expect = 5e-70
 Identities = 125/218 (57%), Positives = 157/218 (72%), Gaps = 8/218 (3%)

Query: 1   MILYGYWRSSAAYRVRIALNLKGVSAEQLSVHLVRDGGEQHKADYIALNPQELVPTLVVD 60
           M LY Y+RSSA+YRVRIALN+K +  E + VHLVRDGGEQ K +Y A+N   +VPTL+  
Sbjct: 1   MKLYSYFRSSASYRVRIALNVKNLPYEYVPVHLVRDGGEQLKPEYRAVNVDGIVPTLI-- 58

Query: 61  DEQDG-DALTQSLAIIEYLDELYPKTPLLPASALERAHVRAMALTIACEIHPLNNLRVLQ 119
              DG + + QSLAIIEYL+E +P+ PLLP +  +RA+VR++AL +ACEIHPLNNLRVL+
Sbjct: 59  ---DGHEVMPQSLAIIEYLEETHPEPPLLPKAPADRAYVRSLALQVACEIHPLNNLRVLK 115

Query: 120 YLTQKLTVNEEAKSAWYHHWVATGFTALETQLVR--HSGRYCFGDKVTIADLCLVPQVYN 177
           YL   L V  +AK AWY HWV TGF  LE  L     +G+ CFGD+ T+AD CL+PQV+N
Sbjct: 116 YLKHTLRVENDAKDAWYRHWVDTGFATLEAHLASDGRTGKLCFGDEPTLADACLIPQVFN 175

Query: 178 AQRFNVDLTPYPNIMRVWAECNQLPAFADAAPERQADA 215
           AQRFNVD + YP I R++    Q+ AFA AAP  Q DA
Sbjct: 176 AQRFNVDTSKYPTIQRIYDHAMQIDAFARAAPGVQPDA 213


Lambda     K      H
   0.321    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 178
Number of extensions: 7
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 214
Length adjustment: 22
Effective length of query: 194
Effective length of database: 192
Effective search space:    37248
Effective search space used:    37248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate H281DRAFT_01970 H281DRAFT_01970 (maleylacetoacetate isomerase (EC 5.2.1.2))
to HMM TIGR01262 (maiA: maleylacetoacetate isomerase (EC 5.2.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.22871.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.22871.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.