Align propionate-CoA ligase (EC 6.2.1.17) (characterized)
to candidate H281DRAFT_04471 H281DRAFT_04471 propionyl-CoA synthetase
Query= BRENDA::P77495 (628 letters) >FitnessBrowser__Burk376:H281DRAFT_04471 Length = 635 Score = 800 bits (2066), Expect = 0.0 Identities = 387/627 (61%), Positives = 484/627 (77%), Gaps = 1/627 (0%) Query: 3 FSEFYQRSINEPEQFWAEQARRIDWQTPFTQTLDHSNPPFARWFCEGRTNLCHNAIDRWL 62 + +F++RSI PE FW ++ARRI W+TPF LD SNPPFARWF GRTNLCHNA+DR L Sbjct: 4 YRDFHRRSIENPEAFWRDEARRIHWETPFDTVLDRSNPPFARWFVGGRTNLCHNAVDRHL 63 Query: 63 EKQPEALALIAVSSETEEERTFTFRQLHDEVNAVASMLRSLGVQRGDRVLVYMPMIAEAH 122 + + AL+ VS+ET ER +T+ +L+ E+N +A+++RSLGV+RGD VL+Y+PMI EA Sbjct: 64 VDRAQQNALVYVSTETGIERRYTYAELYAEINRMAAVMRSLGVKRGDVVLLYLPMIPEAL 123 Query: 123 ITLLACARIGAIHSVVFGGFASHSVAARIDDAKPVLIVSADAGARGGKIIPYKKLLDDAI 182 +LACAR+GAIHSVVFGGFA+ ++AARIDDAKPVLIV+ADAGARGGK+I Y L+D+AI Sbjct: 124 FAMLACARLGAIHSVVFGGFAAPNLAARIDDAKPVLIVTADAGARGGKVIDYTPLVDEAI 183 Query: 183 SQAQHQPRHVLLVDRGLAKMARVSGRDVDFASLRHQHIGARVPVAWLESNETSCILYTSG 242 ++A H+ VLL+DR LA + VD+ LR Q A V WLES+E S +LYTSG Sbjct: 184 ARATHKTARVLLIDRQLAPERLNATYLVDYEPLREQFFDAHVSCEWLESSEPSYVLYTSG 243 Query: 243 TTGKPKGVQRDVGGYAVALATSMDTIFGGKAGSVFFCASDIGWVVGHSYIVYAPLLAGMA 302 TTGKPKGVQRDVGGYAVALA SM+ IF GKAG F ASD+GWVVGHSYIVYAPL+AG+ Sbjct: 244 TTGKPKGVQRDVGGYAVALAASMEYIFEGKAGDTMFTASDVGWVVGHSYIVYAPLIAGLT 303 Query: 303 TIVYEGLPTWPDCGVWWTIVEKYQVSRMFSAPTAIRVLKKFPTAEIRKHDLSSLEVLYLA 362 T++YEG P PD G+WW +VE+++++ MF+APTA+RVLKK A + DLSSL L+LA Sbjct: 304 TVMYEGTPIRPDGGIWWRLVEQHKINLMFTAPTALRVLKKQDPALLESADLSSLRTLFLA 363 Query: 363 GEPLDEPTASWVSNTLDVPVIDNYWQTESGWPIMAIARGLDDRPTRLGSPGVPMYGYNVQ 422 GEPLDEPTASW++ L PVIDNYWQTE+GWP++AI RG++ PT+LGSPGVP G+N+ Sbjct: 364 GEPLDEPTASWITGALGKPVIDNYWQTETGWPMLAIPRGVEALPTKLGSPGVPSAGFNLT 423 Query: 423 LLNEVTGEPCGVNEKGMLVVEGPLPPGCIQTIWGDDGRFVKTYWSLF-SRPVYATFDWGI 481 L NE+TGEPC EKG+L + PLPPGC+ T+WGDD RF+ TYWS F + VY+TFDWGI Sbjct: 424 LRNELTGEPCPPGEKGVLTLNYPLPPGCMSTVWGDDKRFISTYWSSFPDQQVYSTFDWGI 483 Query: 482 RDADGYHFILGRTDDVINVAGHRLGTREIEESISSHPGVAEVAVVGVKDALKGQVAVAFV 541 +D DGY ILGRTDDVINVAGHRLGTREIEE++SSH VAEVAVVGV D LKGQ A+AFV Sbjct: 484 QDEDGYVTILGRTDDVINVAGHRLGTREIEEALSSHAAVAEVAVVGVADPLKGQAAMAFV 543 Query: 542 IPKESDSLEDRDVAHSQEKAIMALVDSQIGNFGRPAHVWFVSQLPKTRSGKMLRRTIQAI 601 + +++ + D D E + A VD Q+G RP+ V VS LPKTRSGK+LRR I A+ Sbjct: 544 VLRDAQAYADVDARTKLEAELTATVDRQLGAIARPSRVVIVSMLPKTRSGKLLRRAIAAL 603 Query: 602 CEGRDPGDLTTIDDPASLDQIRQAMEE 628 EGR+PG+L TI+DPA+L Q+R+ + E Sbjct: 604 AEGREPGELPTIEDPAALQQVREGLSE 630 Lambda K H 0.320 0.136 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1165 Number of extensions: 39 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 628 Length of database: 635 Length adjustment: 38 Effective length of query: 590 Effective length of database: 597 Effective search space: 352230 Effective search space used: 352230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (25.4 bits)
Align candidate H281DRAFT_04471 H281DRAFT_04471 (propionyl-CoA synthetase)
to HMM TIGR02316 (prpE: propionate--CoA ligase (EC 6.2.1.17))
../bin/blast/fastacmd -i /tmp/list.1577.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1577.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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