Align phosphogluconate dehydratase (EC 4.2.1.12) (characterized)
to candidate H281DRAFT_04278 H281DRAFT_04278 6-phosphogluconate dehydratase
Query= BRENDA::Q1PAG1 (608 letters) >FitnessBrowser__Burk376:H281DRAFT_04278 Length = 641 Score = 759 bits (1960), Expect = 0.0 Identities = 376/601 (62%), Positives = 470/601 (78%), Gaps = 2/601 (0%) Query: 2 HPRVLEVTERLVARSRATREAYLALIRGAASDGPQRGKLQCANFAHGVAGCGSEDKHSLR 61 H ++L+VT+R+V RS+ TREAYLA I A P RG L CAN AHG AG DK ++ Sbjct: 5 HSQLLKVTQRVVERSKPTREAYLARIHEAQGRFPARGALSCANLAHGFAGLEGNDKLVIK 64 Query: 62 MMNAANVAIVSSYNDMLSAHQPYEHFPEQIKKALREMGSVGQFAGGTPAMCDGVTQGEAG 121 + NV IVSSYN+MLSAH PY+++P+ IK+A RE G V QFAGG PAMCDG+TQG AG Sbjct: 65 QIREPNVGIVSSYNEMLSAHAPYKNYPDIIKQAARENGGVAQFAGGVPAMCDGITQGNAG 124 Query: 122 MELSLPSREVIALSTAVALSHNMFDAALMLGICDKIVPGLMMGALRFGHLPTIFVPGGPM 181 MELSL SREVIA+STAVAL+HNMFDAAL LGICDKIVPGL++GAL+FGHLPTIFVP GPM Sbjct: 125 MELSLFSREVIAMSTAVALTHNMFDAALCLGICDKIVPGLLIGALQFGHLPTIFVPAGPM 184 Query: 182 PSGISNKEKADVRQRYAEGKATREELLESEMKSYHSPGTCTFYGTANTNQLLMEVMGLHL 241 SG+SN +KA RQ++A G+ R+ LLE+E +YH GTCTFYGTAN+NQ+LME+MGLHL Sbjct: 185 TSGLSNDDKAKTRQQFATGQCGRDALLEAEAAAYHGHGTCTFYGTANSNQMLMEIMGLHL 244 Query: 242 PGASFVNPYTPLRDALTHEAAQQVTRLTKQSGNFTPIGEIVDERSLVNSIVALHATGGST 301 PG++FV+P+TPLRDALT +AA++V LT + G++ PIG ++DE+++VN IVAL ATGGST Sbjct: 245 PGSAFVHPHTPLRDALTAQAARRVLDLTVERGHYMPIGHVIDEKAIVNGIVALLATGGST 304 Query: 302 NHTLHMPAIAQAAGIQLTWQDMADLSEVVPTLSHVYPNGKADINHFQAAGGMAFLIRELL 361 NHTLH+ AIA+AAGI + W D LS+ VP L+ +YPNGKAD+NHF AAGG+AFL+R LL Sbjct: 305 NHTLHLVAIARAAGIVIDWDDFDTLSQAVPLLAKIYPNGKADVNHFHAAGGVAFLVRNLL 364 Query: 362 EAGLLHEDVNTVAGRGLSRYTQEPFLDNGKLVWRDGPIESLDENILRPVARAFSPEGGLR 421 E GLLHEDVNTVAG+GL YT+EP L +GKL W G S D +LR + F +GGLR Sbjct: 365 EGGLLHEDVNTVAGKGLHHYTEEPKLLDGKLQWVPGVQASEDTAVLRGIKEPFQADGGLR 424 Query: 422 VMEGNLGRGVMKVSAVALQHQIVEAPAVVFQDQQDLADAFKAGELEKDFVAVMRFQGPRS 481 +M+G LGRGV+K+SAVA QH+ V+APA+VF Q+ + +AF GEL++DF+AV+RFQG R+ Sbjct: 425 LMQGKLGRGVIKISAVAQQHRKVKAPAIVFDSQEAVQEAFDNGELKRDFIAVVRFQGARA 484 Query: 482 NGMPELHKMTPFLGVLQDRGFKVALVTDGRMSGASGKIPAAIHVSPEAQVGGALARVRDG 541 NGMPELH++TP LGVLQD+GF VALVTDGRMSGASGK+PA IH+SPEA + G + +VR G Sbjct: 485 NGMPELHRLTPLLGVLQDQGFHVALVTDGRMSGASGKVPAVIHLSPEALLQGPIGKVRSG 544 Query: 542 DIIRVDGVKGTLELKVDADEFAAREPAKGL--LGNNVGSGRELFGFMRMAFSSAEQGASA 599 D++ +D G L++++D E+AAR A L N VG GRELFG R A + AEQGAS Sbjct: 545 DMLVIDAEAGVLDIEIDPAEWAARPNAVPLHQAENEVGFGRELFGVFRAAAAPAEQGASV 604 Query: 600 F 600 F Sbjct: 605 F 605 Lambda K H 0.318 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1192 Number of extensions: 49 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 608 Length of database: 641 Length adjustment: 37 Effective length of query: 571 Effective length of database: 604 Effective search space: 344884 Effective search space used: 344884 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.4 bits)
Align candidate H281DRAFT_04278 H281DRAFT_04278 (6-phosphogluconate dehydratase)
to HMM TIGR01196 (edd: phosphogluconate dehydratase (EC 4.2.1.12))
../bin/blast/fastacmd -i /tmp/list.1048.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1048.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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