GapMind for catabolism of small carbon sources

 

Alignments for a candidate for galU in Paraburkholderia bryophila 376MFSha3.1

Align UTP-glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (characterized)
to candidate H281DRAFT_00962 H281DRAFT_00962 UDP-glucose pyrophosphorylase

Query= BRENDA::Q8PK83
         (297 letters)



>FitnessBrowser__Burk376:H281DRAFT_00962
          Length = 308

 Score =  291 bits (746), Expect = 1e-83
 Identities = 151/272 (55%), Positives = 192/272 (70%), Gaps = 1/272 (0%)

Query: 4   RIRKAVFPVAGLGTRFLPATKTVPKEMLPIIDKPLIQYAVDEAIQAGCDTLIFVTNRYKH 63
           ++ KAVFPVAGLGTRFLPATK  PKEMLPI+DKPLIQYAV+EAI AG   +IFVT R K 
Sbjct: 3   KVTKAVFPVAGLGTRFLPATKASPKEMLPIVDKPLIQYAVEEAIAAGITEMIFVTGRSKR 62

Query: 64  SIADYFDKAYELEQKLERAGKLEQLELVRHALPDGVRAIFVTQAEALGLGHAVLCAKAVV 123
           +I D+FDK+YE+E +LE   K + L+LVR   P  V   +V QAEALGLGHAVLCA+ +V
Sbjct: 63  AIEDHFDKSYEIEAELEARNKQKLLDLVRSIKPANVDCFYVRQAEALGLGHAVLCAEKLV 122

Query: 124 GNEPFAVLLPDDLMWNRGDAALTQMANVAEASGGSVIAVEDVPHDKTASYGIVSTDAFDG 183
           G  PFAV+L DDL+ +     ++Q+ +       SVI VE +  + + SYG+V    ++ 
Sbjct: 123 GESPFAVILADDLL-HSSKPVMSQLVDTFNHYHSSVIGVETIAREDSRSYGVVDGREWED 181

Query: 184 RKGRINAIVEKPKPEVAPSNLAVVGRYVLSPKIFDLLEATGAGAGGEIQLTDAIAELLKE 243
              +++ IVEKP P+ APSNL VVGRYVL P IF  + A   GAGGE+QLTDA+  LL E
Sbjct: 182 NVIKLSGIVEKPAPDNAPSNLGVVGRYVLMPTIFKHIRALKPGAGGELQLTDAVQSLLTE 241

Query: 244 EQVDAFRFEGRRFDCGAHIGLIEATVHFALEH 275
           EQV A+R+ G RFDCG+ +G ++ATV FAL H
Sbjct: 242 EQVLAYRYFGTRFDCGSKLGYLKATVEFALRH 273


Lambda     K      H
   0.319    0.137    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 282
Number of extensions: 7
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 308
Length adjustment: 27
Effective length of query: 270
Effective length of database: 281
Effective search space:    75870
Effective search space used:    75870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate H281DRAFT_00962 H281DRAFT_00962 (UDP-glucose pyrophosphorylase)
to HMM TIGR01099 (galU: UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.19897.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19897.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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