Align UTP-glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (characterized)
to candidate H281DRAFT_00962 H281DRAFT_00962 UDP-glucose pyrophosphorylase
Query= BRENDA::Q8PK83 (297 letters) >FitnessBrowser__Burk376:H281DRAFT_00962 Length = 308 Score = 291 bits (746), Expect = 1e-83 Identities = 151/272 (55%), Positives = 192/272 (70%), Gaps = 1/272 (0%) Query: 4 RIRKAVFPVAGLGTRFLPATKTVPKEMLPIIDKPLIQYAVDEAIQAGCDTLIFVTNRYKH 63 ++ KAVFPVAGLGTRFLPATK PKEMLPI+DKPLIQYAV+EAI AG +IFVT R K Sbjct: 3 KVTKAVFPVAGLGTRFLPATKASPKEMLPIVDKPLIQYAVEEAIAAGITEMIFVTGRSKR 62 Query: 64 SIADYFDKAYELEQKLERAGKLEQLELVRHALPDGVRAIFVTQAEALGLGHAVLCAKAVV 123 +I D+FDK+YE+E +LE K + L+LVR P V +V QAEALGLGHAVLCA+ +V Sbjct: 63 AIEDHFDKSYEIEAELEARNKQKLLDLVRSIKPANVDCFYVRQAEALGLGHAVLCAEKLV 122 Query: 124 GNEPFAVLLPDDLMWNRGDAALTQMANVAEASGGSVIAVEDVPHDKTASYGIVSTDAFDG 183 G PFAV+L DDL+ + ++Q+ + SVI VE + + + SYG+V ++ Sbjct: 123 GESPFAVILADDLL-HSSKPVMSQLVDTFNHYHSSVIGVETIAREDSRSYGVVDGREWED 181 Query: 184 RKGRINAIVEKPKPEVAPSNLAVVGRYVLSPKIFDLLEATGAGAGGEIQLTDAIAELLKE 243 +++ IVEKP P+ APSNL VVGRYVL P IF + A GAGGE+QLTDA+ LL E Sbjct: 182 NVIKLSGIVEKPAPDNAPSNLGVVGRYVLMPTIFKHIRALKPGAGGELQLTDAVQSLLTE 241 Query: 244 EQVDAFRFEGRRFDCGAHIGLIEATVHFALEH 275 EQV A+R+ G RFDCG+ +G ++ATV FAL H Sbjct: 242 EQVLAYRYFGTRFDCGSKLGYLKATVEFALRH 273 Lambda K H 0.319 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 282 Number of extensions: 7 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 297 Length of database: 308 Length adjustment: 27 Effective length of query: 270 Effective length of database: 281 Effective search space: 75870 Effective search space used: 75870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate H281DRAFT_00962 H281DRAFT_00962 (UDP-glucose pyrophosphorylase)
to HMM TIGR01099 (galU: UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9))
../bin/blast/fastacmd -i /tmp/list.19897.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19897.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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