Align deoxyribose-phosphate aldolase (EC 4.1.2.4) (characterized)
to candidate H281DRAFT_01118 H281DRAFT_01118 deoxyribose-phosphate aldolase
Query= BRENDA::Q9Y315 (318 letters) >FitnessBrowser__Burk376:H281DRAFT_01118 Length = 337 Score = 370 bits (951), Expect = e-107 Identities = 187/314 (59%), Positives = 238/314 (75%), Gaps = 2/314 (0%) Query: 5 NRGTELDLSWISKIQVNHPAVLRRAEQIQARRTVKKEWQAAWLLKAVTFIDLTTLSGDDT 64 N G D SW+ +++N AV RR + RRTVKK+ QAAWLLKAVT IDLTTLSGDDT Sbjct: 26 NPGMPFDASWLDGLRINQSAVERRTATLATRRTVKKDAQAAWLLKAVTCIDLTTLSGDDT 85 Query: 65 SSNIQRLCYKAKYPIREDLLKALNMHDKGITTAAVCVYPARVCDAVKALKAAGCNIPVAS 124 ++RLC KA+ P+R DLL+AL M + +TT AVCVY V AV ALK +G IPVA+ Sbjct: 86 EGRVRRLCAKARQPVRADLLEALGMTPQRVTTGAVCVYHRFVAAAVDALKGSG--IPVAA 143 Query: 125 VAAGFPAGQTHLKTRLEEIRLAVEDGATEIDVVINRSLVLTGQWEALYDEIRQFRKACGE 184 V+ GFPAG +L+EI +V DGA EID+V+ R VLTG W+ALYDE+R+FR ACG Sbjct: 144 VSTGFPAGLIPHPLKLKEIEASVADGAAEIDIVVTREYVLTGNWQALYDEVREFRAACGP 203 Query: 185 AHLKTILATGELGTLTNVYKASMIAMMAGSDFIKTSTGKETVNATFPVAIVMLRAIRDFF 244 AHLK ILATG++ TL+N+ +ASM+ MMAG+DFIKTSTGKE VNAT V++VM+R IR++ Sbjct: 204 AHLKAILATGDIRTLSNIARASMVCMMAGADFIKTSTGKEGVNATLDVSLVMVRMIREYH 263 Query: 245 WKTGNKIGFKPAGGIRSAKDSLAWLSLVKEELGDEWLKPELFRIGASTLLSDIERQIYHH 304 +TG IGFKPAGG+ SAK L++ L+KEELG WL+PELFRIGAS+LL+DIERQ+ HH Sbjct: 264 ERTGVPIGFKPAGGVSSAKSVLSYQILMKEELGRAWLEPELFRIGASSLLADIERQLEHH 323 Query: 305 VTGRYAAYHDLPMS 318 V+GRY+A++ P++ Sbjct: 324 VSGRYSAFNRHPVA 337 Lambda K H 0.320 0.133 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 336 Number of extensions: 9 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 318 Length of database: 337 Length adjustment: 28 Effective length of query: 290 Effective length of database: 309 Effective search space: 89610 Effective search space used: 89610 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate H281DRAFT_01118 H281DRAFT_01118 (deoxyribose-phosphate aldolase)
to HMM TIGR00126 (deoC: deoxyribose-phosphate aldolase (EC 4.1.2.4))
../bin/blast/fastacmd -i /tmp/list.19449.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19449.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.