Align acetate kinase monomer (EC 2.7.2.15) (characterized)
to candidate H281DRAFT_01409 H281DRAFT_01409 acetate kinase
Query= metacyc::ACKCLOS-MONOMER (401 letters) >FitnessBrowser__Burk376:H281DRAFT_01409 Length = 393 Score = 253 bits (645), Expect = 9e-72 Identities = 151/401 (37%), Positives = 224/401 (55%), Gaps = 20/401 (4%) Query: 4 LVINCGSSSIKYQFIDMKDETV--LAKGLVERIGIKGSVITHKVNGEKYVTETPME---- 57 LV+N GSSSIK+ D + + + +G ++ + G + + Sbjct: 6 LVLNAGSSSIKFSAFDAQTAELACVLRGQIDGLFSSPHFAAFDAAGAQAGAHAWGDGASL 65 Query: 58 DHKKAIKLVLDALLNDEYGVIKNIDEISAVGHRIVHGGEKYANSVLIDEDVMKSIEDCVS 117 DH +AI + D L G ++AVGHR+VHGG ++ VL+D V+ + Sbjct: 66 DHAEAIAHIADFLRGHREG-----HRLTAVGHRVVHGGARFVAPVLVDASVLAELHTLTP 120 Query: 118 LAPLHNPPHIIGINACKELMPNVPMVAVFDTAFHQTIPDYAYMYAIPYEYYDKYKIRKYG 177 LAPLH P ++ I E +P +A FDTAFH T P+ A +A+P ++ +R+YG Sbjct: 121 LAPLHQPHNLKPIAIIAERNSAMPQIACFDTAFHATQPEQAKAFALPAAVTER-GVRRYG 179 Query: 178 FHGTSHKYVSRTAAEFIGKKVEDLKMVVCHMGNGASITAVENGKSVDTSMGFTPLGGLAM 237 FHG S++Y++ E + VV H+GNGAS+ A+ +SV T+MGFT L GL M Sbjct: 180 FHGLSYEYIASRLPEMSPAAAAG-RTVVAHLGNGASLCALSACRSVATTMGFTALDGLMM 238 Query: 238 GTRSGDMDPAVVTFLMDKLNINASEVNNLLNKKSGIEGLSGISSDMRDIKKGNYVDKDPK 297 GTRSG +DP V+ +L+++LN+ EV NLL +SG+ G+SGIS DMR + DP+ Sbjct: 239 GTRSGSLDPGVILYLLNELNMTTREVENLLYSQSGLLGVSGISGDMRVL----LASDDPR 294 Query: 298 AMLAYSVFNYKIKQFIGSYTAVMNGLDCLVFTGGIGENSFENRREICKNMDYLGIKIDDK 357 A A ++ Y+I + +GS A + G+D LVFT GIGE++ + R+ I + + GI ID Sbjct: 295 ARFAVELYVYRICRELGSLIAALKGIDALVFTAGIGEHATQVRQRIGEYAQWCGIDIDSD 354 Query: 358 KNDETMGIPMDISAEGSKVRVLVIPTNEELMIARDTKDIVG 398 N IS S+V V ++PTNEELMIAR T+ ++G Sbjct: 355 ANQANDSC---ISTPTSRVGVWIVPTNEELMIARHTRALIG 392 Lambda K H 0.317 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 352 Number of extensions: 24 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 401 Length of database: 393 Length adjustment: 31 Effective length of query: 370 Effective length of database: 362 Effective search space: 133940 Effective search space used: 133940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate H281DRAFT_01409 H281DRAFT_01409 (acetate kinase)
to HMM TIGR00016 (ackA: acetate kinase (EC 2.7.2.1))
../bin/blast/fastacmd -i /tmp/list.25026.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.25026.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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