Align Muconolactone Delta-isomerase; MIase; EC 5.3.3.4 (characterized)
to candidate H281DRAFT_01644 H281DRAFT_01644 muconolactone delta-isomerase
Query= SwissProt::P80573 (92 letters) >FitnessBrowser__Burk376:H281DRAFT_01644 Length = 96 Score = 141 bits (355), Expect = 2e-39 Identities = 65/92 (70%), Positives = 78/92 (84%) Query: 1 MLYLVRMDVNLPHDMPAAQADDIKAREKAYAQQLQHEGKWQQLYRVVGEYANYSIFDVGS 60 ML+ VRMDVN PHD+PA AD+IKAREKAY+Q+LQ GKW+ ++R+ GEYANYSIFDV S Sbjct: 1 MLFHVRMDVNFPHDVPAHVADEIKAREKAYSQELQRSGKWRHIWRLAGEYANYSIFDVDS 60 Query: 61 HDELHTLLSGLPLFPYMKIHVTPLAKHPSSIR 92 + ELH +L+ LPLFPYMKI VTPL +HPSSIR Sbjct: 61 NAELHDILTALPLFPYMKISVTPLCRHPSSIR 92 Lambda K H 0.321 0.136 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 73 Number of extensions: 1 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 92 Length of database: 96 Length adjustment: 10 Effective length of query: 82 Effective length of database: 86 Effective search space: 7052 Effective search space used: 7052 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.0 bits) S2: 39 (19.6 bits)
Align candidate H281DRAFT_01644 H281DRAFT_01644 (muconolactone delta-isomerase)
to HMM TIGR03221 (catC: muconolactone delta-isomerase (EC 5.3.3.4))
../bin/blast/fastacmd -i /tmp/list.18537.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18537.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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