Align Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (characterized)
to candidate H281DRAFT_04741 H281DRAFT_04741 homogentisate 1,2-dioxygenase
Query= reanno::Cup4G11:RR42_RS31275 (449 letters) >FitnessBrowser__Burk376:H281DRAFT_04741 Length = 448 Score = 723 bits (1865), Expect = 0.0 Identities = 339/430 (78%), Positives = 377/430 (87%), Gaps = 1/430 (0%) Query: 21 PGYQSGFANEFATEALPGALPVGQNSPQRAPYGLYAEQISGTAFTAPRAHNRRSWCYRIR 80 PGYQSGF NEFATEALPGALP G+NSPQRA YGLYAEQ+SGTAFTAPR HNRR+W YRIR Sbjct: 19 PGYQSGFGNEFATEALPGALPEGRNSPQRAAYGLYAEQLSGTAFTAPRGHNRRTWLYRIR 78 Query: 81 AAAMHEPFTRVEQSRIVSHFDAVPPSP-NQMRWSPPAMPKEPTDFVDGIITMAGNGGPEA 139 AA+H+PFT + R+V++F VPP+P NQ+RW MP EPTDFVDG +TMAGNG ++ Sbjct: 79 PAAVHKPFTPLPSERLVANFAEVPPTPPNQLRWDALPMPGEPTDFVDGWVTMAGNGAADS 138 Query: 140 MSGCGIHLYLANRSMTDRFFYNADGEMLIVPQQGRLRLATEMGLLDVEPQEIVVIPRGVR 199 MSGC IHLY ANRSMTDRFFY+ADGE+LIVPQ+GRL +ATE+G L+V P EI VIPRGVR Sbjct: 139 MSGCAIHLYAANRSMTDRFFYSADGELLIVPQEGRLDIATELGRLEVRPFEIAVIPRGVR 198 Query: 200 FRVELPDGEARGYICENYGALFRLPDLGVIGSNGLANPRDFLTPHAWYEDREGDFELVAK 259 F V LPDG ARGYICEN+GAL RLPDLG IGSNGLANPRDFLTPHA YEDREGDFELVAK Sbjct: 199 FAVSLPDGTARGYICENFGALLRLPDLGPIGSNGLANPRDFLTPHAAYEDREGDFELVAK 258 Query: 260 FQGNLWRAAIGHSPLDVVAWHGNYAPYKYDLRRFNTIGSISFDHPDPSIFLVLQSPSDTP 319 GNLWRA IGHSPLDVVAWHGNYAPYKYDLRRFNTIGSISFDHPDPSIFLVLQS SDTP Sbjct: 259 MNGNLWRADIGHSPLDVVAWHGNYAPYKYDLRRFNTIGSISFDHPDPSIFLVLQSQSDTP 318 Query: 320 GVDSIDFVIFGPRWLAMQNTFRPPWFHRNIASEFMGLIEGVYDAKADGFSPGGASLHNCM 379 GVDS+DFVIF PRWLA ++TFRPPWFHRN+ASEFMGL+ GVYDAKA+GF PGGASLHNCM Sbjct: 319 GVDSLDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGVYDAKAEGFVPGGASLHNCM 378 Query: 380 SGHGPDAETFAKATAADTSQPHRIGDTMAFMFETPAVIRPTPYAAESAQLQDDYYRCWQG 439 SGHGPDA+TF KA+ +DTS+P ++GDTMAFMFET +I+PT +A E+AQLQ YY CWQG Sbjct: 379 SGHGPDADTFEKASHSDTSKPVKVGDTMAFMFETRTLIKPTRFALETAQLQAHYYECWQG 438 Query: 440 LKKHFNPNER 449 LKKHFNP +R Sbjct: 439 LKKHFNPEQR 448 Lambda K H 0.320 0.138 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 852 Number of extensions: 33 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 449 Length of database: 448 Length adjustment: 33 Effective length of query: 416 Effective length of database: 415 Effective search space: 172640 Effective search space used: 172640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate H281DRAFT_04741 H281DRAFT_04741 (homogentisate 1,2-dioxygenase)
to HMM TIGR01015 (hmgA: homogentisate 1,2-dioxygenase (EC 1.13.11.5))
../bin/blast/fastacmd -i /tmp/list.32662.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.32662.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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