Align dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate H281DRAFT_00468 H281DRAFT_00468 dihydrolipoamide dehydrogenase
Query= BRENDA::Q0KBV8 (594 letters) >FitnessBrowser__Burk376:H281DRAFT_00468 Length = 590 Score = 887 bits (2291), Expect = 0.0 Identities = 455/599 (75%), Positives = 509/599 (84%), Gaps = 14/599 (2%) Query: 1 MSVIEVKVPDIGDFDAVEVIEVLVKAGDTVEVEQSLIVLESDKASMDVPSSAAGKVVEVK 60 MS++EVKVPDIGDF V+VIEV +K GD +E EQ+L+ LESDKAS++VPS AG V EV+ Sbjct: 1 MSLVEVKVPDIGDFKDVDVIEVNIKPGDVIENEQALMTLESDKASIEVPSDTAGTVKEVR 60 Query: 61 VKVGDKVGQGAVICTIEAQQAAAAPAPAQAPAPAQAP--APAAAAP---APAPAAASHSG 115 VK GDKV QG +I +E A AAPA APA+ P AP A P APAP A S SG Sbjct: 61 VKAGDKVSQGTIIALVETS-ADAAPAKDAPKAPAKEPEKAPTEAKPQAAAPAPQAGSFSG 119 Query: 116 GADIQCEMLVLGAGPGGYSAAFRAADLGMNTVLVERYSTLGGVCLNVGCIPSKALLHNAA 175 ADI+C+MLVLG+GPGGYSAAFR+ADLGM TVLVERY+TLGGVCLNVGCIPSKALLH A Sbjct: 120 SADIECDMLVLGSGPGGYSAAFRSADLGMKTVLVERYATLGGVCLNVGCIPSKALLHTAL 179 Query: 176 VIDEAKALAAHGILFGEAKIDLDGLRHYKNQVVGKLTGGLAGMAKARKVQVVRGIGNFLD 235 VIDEA+AL AHGI F + +IDLD LR +K+ VV KLTGGLAGMAK RKV+VV G G+F+D Sbjct: 180 VIDEAEALGAHGITFAKPQIDLDKLRDFKSGVVKKLTGGLAGMAKMRKVEVVTGTGSFVD 239 Query: 236 PHHMEVELTEGEGKRSTGKKTVIRFEKAIIAAGSQAVKLPFIPEDPRIVDSTGALELPEV 295 P+HMEV+ TEG GKK V++F++AIIAAGS+AVKLPFIPEDPR+VDSTGALEL ++ Sbjct: 240 PNHMEVQ-TEG------GKK-VVKFKQAIIAAGSEAVKLPFIPEDPRVVDSTGALELRQI 291 Query: 296 PNKMLVIGGGIIGLEMATVYSTLGADIDVVEMLDGLMNGADRDLVKVWEKKNKDRFGKVM 355 P +MLVIGGGIIGLEMATVY+TLGA IDVVEMLDGLM GADRDLVKVWEK N RF VM Sbjct: 292 PQRMLVIGGGIIGLEMATVYATLGAKIDVVEMLDGLMAGADRDLVKVWEKYNSKRFANVM 351 Query: 356 LKTKTVGVEAKPDGIYVKFEGEAAPAEPQRYDLVLVSVGRSPNGKRISAEKAGVAVSERG 415 LKTKT EAK DGIYV FEGE AP E QRYDLVLV+VGRSPNGK+I A+KAGV V++RG Sbjct: 352 LKTKTTAAEAKDDGIYVSFEGEKAPPEAQRYDLVLVAVGRSPNGKKIGADKAGVTVTDRG 411 Query: 416 FINVDKQMRTNVPHIFAIGDIVGQPMLAHKAVHEAHVAAEAAHGEKAYFDAKQIPSVAFT 475 FI+VDKQMRTNVPHIFAIGDIVGQPMLAHKAVHE HVAAEAAHGEKAYFDA QIPSVA+T Sbjct: 412 FIDVDKQMRTNVPHIFAIGDIVGQPMLAHKAVHEGHVAAEAAHGEKAYFDALQIPSVAYT 471 Query: 476 DPEVAWAGLTEDECKEKGIKYSKGVFPWAASGRAIANGRDEGFTKLIFDEETHRVIGGGI 535 DPEVAWAG TED+ K +G+KY K VFPWAASGRAIANGRDEGFTKL+FDEETHRVIGGGI Sbjct: 472 DPEVAWAGKTEDQLKAEGVKYGKAVFPWAASGRAIANGRDEGFTKLLFDEETHRVIGGGI 531 Query: 536 VGTHAGDLISEVCLAIEMGADAVDIGKTIHPHPTLGESIGMAAEIYEGTCTDVPPPRKR 594 VG +AGDLISEVCLAIEMGADA DIGKTIHPHPTLGESIGMAAE+YEG CTD+PP +K+ Sbjct: 532 VGLNAGDLISEVCLAIEMGADATDIGKTIHPHPTLGESIGMAAELYEGVCTDLPPQKKK 590 Lambda K H 0.316 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1101 Number of extensions: 35 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 594 Length of database: 590 Length adjustment: 37 Effective length of query: 557 Effective length of database: 553 Effective search space: 308021 Effective search space used: 308021 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)
Align candidate H281DRAFT_00468 H281DRAFT_00468 (dihydrolipoamide dehydrogenase)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.5688.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5688.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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