Align Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) (characterized)
to candidate H281DRAFT_01202 H281DRAFT_01202 methylmalonate-semialdehyde dehydrogenase [acylating]
Query= reanno::pseudo3_N2E3:AO353_05990 (507 letters) >FitnessBrowser__Burk376:H281DRAFT_01202 Length = 502 Score = 845 bits (2184), Expect = 0.0 Identities = 416/494 (84%), Positives = 454/494 (91%) Query: 14 VKLLIDGQWVESQTTEWHDIVNPATQQVLAKVPFATPAEVDAAISAAHRAFQTWKLTPIG 73 VKLLI+G++V+S+TTEW D+VNPATQQVLA+VPFAT EVD AI +AH AF+TWK TPIG Sbjct: 9 VKLLINGEFVDSRTTEWRDVVNPATQQVLARVPFATAGEVDEAIRSAHAAFKTWKDTPIG 68 Query: 74 ARMRIMLKLQALIREHSKRIAVVLSAEQGKTIADAEGDIFRGLEVVEHACSIGSLQMGEF 133 ARMRIMLK QALIREH RIA LSAEQGKTI DAEGDIFRGLEVVEHACSIGSLQ GEF Sbjct: 69 ARMRIMLKYQALIREHMPRIAKTLSAEQGKTIPDAEGDIFRGLEVVEHACSIGSLQQGEF 128 Query: 134 AENVAGGVDTYTLRQPIGVCAGITPFNFPAMIPLWMFPMAIACGNTFVLKPSEQDPMSTM 193 AENVAGGVDTYTLRQP+GVCAGITPFNFPAMIPLWMFPMAI CGNTFVLKPSEQDPMSTM Sbjct: 129 AENVAGGVDTYTLRQPLGVCAGITPFNFPAMIPLWMFPMAIVCGNTFVLKPSEQDPMSTM 188 Query: 194 LLVELAIEAGIPAGVLNVVHGGKDVVDALCTHKDIKAVSFVGSTAVGTHVYDLAGKHGKR 253 LVELA+EAG+P GVLNVVHGGKDVVDALCTH+ +KAVSFVGSTAVGTHVY L +HGKR Sbjct: 189 QLVELALEAGVPKGVLNVVHGGKDVVDALCTHELVKAVSFVGSTAVGTHVYRLGSEHGKR 248 Query: 254 VQSMMGAKNHAVVLPDANREQALNALVGAGFGAAGQRCMATSVVVLVGAAKQWLPDLKAL 313 VQSMMGAKNHAVVLPDANREQ LNAL GAGFGAAGQRCMATSVVVLVGAA+QWLP++ A Sbjct: 249 VQSMMGAKNHAVVLPDANREQTLNALAGAGFGAAGQRCMATSVVVLVGAAQQWLPEIVAK 308 Query: 314 AQKLKVNAGSEPGTDVGPVISKRAKARILDLIESGIKEGAKLELDGRDITVPGYEKGNFV 373 A+ LKVNAG+EP TD+GPV+S+ AK RIL LIE+G+KEGA L LDGRD+TVPGYE+GNF+ Sbjct: 309 AKTLKVNAGNEPNTDIGPVVSRAAKERILGLIEAGVKEGATLALDGRDVTVPGYEQGNFI 368 Query: 374 GPTLFSGVTTDMQIYTQEIFGPVLVVLEVDTLDQAIALVNANPFGNGTGLFTQSGAAARK 433 GPT+FS V+T+M+IY EIFGPVL+VL TLD AIALVN+NPFGNG GLFTQSGAAARK Sbjct: 369 GPTIFSDVSTEMEIYRTEIFGPVLLVLNAATLDDAIALVNSNPFGNGVGLFTQSGAAARK 428 Query: 434 FQNEIDVGQVGINIPIPVPVPFFSFTGSRGSKLGDLGPYGKQVVQFYTQTKTVTSRWFDD 493 FQ+EIDVGQVGINIPIPVPVPFFSFTGSRGSKLGDLGPYGKQVVQFYTQTKTVT+RWFDD Sbjct: 429 FQSEIDVGQVGINIPIPVPVPFFSFTGSRGSKLGDLGPYGKQVVQFYTQTKTVTARWFDD 488 Query: 494 DSVNDGVNTTINLR 507 D+VNDGVNTTI+LR Sbjct: 489 DTVNDGVNTTISLR 502 Lambda K H 0.319 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 830 Number of extensions: 23 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 507 Length of database: 502 Length adjustment: 34 Effective length of query: 473 Effective length of database: 468 Effective search space: 221364 Effective search space used: 221364 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.6 bits)
Align candidate H281DRAFT_01202 H281DRAFT_01202 (methylmalonate-semialdehyde dehydrogenase [acylating])
to HMM TIGR01722 (mmsA: methylmalonate-semialdehyde dehydrogenase (acylating) (EC 1.2.1.27))
../bin/blast/fastacmd -i /tmp/list.27075.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27075.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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