Align Beta-ketoadipyl-CoA thiolase; 3-oxoadipyl-CoA thiolase; EC 2.3.1.174 (characterized)
to candidate CCNA_02490 CCNA_02490 3-ketoacyl-CoA thiolase
Query= SwissProt::Q8VPF1 (401 letters) >FitnessBrowser__Caulo:CCNA_02490 Length = 399 Score = 567 bits (1462), Expect = e-166 Identities = 289/396 (72%), Positives = 331/396 (83%), Gaps = 1/396 (0%) Query: 6 YICDAVRTPIGRFGGSLAAVRADDLAAVPVKALVERNPQVDWSQLDEVYLGCANQAGEDN 65 YICD +RTPIGR+GGSL+ VRADDLAA+P+KALV RNP +D + +DE+ LG ANQAGEDN Sbjct: 5 YICDGIRTPIGRYGGSLSKVRADDLAAIPLKALVARNPSLDLAAIDEIVLGSANQAGEDN 64 Query: 66 RNVARMALLLAGLPDSVPGVTLNRLCASGMDAVGTAFRAIASGEAELVIAGGVESMSRAP 125 RNVARMALLLAG P SVPGVT+NRLCASG++AVG A RAIASG +LVIAGGVESMSRAP Sbjct: 65 RNVARMALLLAGYPVSVPGVTVNRLCASGLEAVGYAARAIASGHNDLVIAGGVESMSRAP 124 Query: 126 YVMGKADSAFGRGQKIEDTTIGWRFINPLMKAQYGVDAMPETADNVADDYKVSRADQDAF 185 +VMGKADSAF R +I DTTIGWRF+NP M+ YGVD+MPETA+NVA DY V+R DQDAF Sbjct: 125 FVMGKADSAFSRSAEIFDTTIGWRFVNPAMRKLYGVDSMPETAENVATDYGVNREDQDAF 184 Query: 186 ALRSQQLAGRAQAAGYFAEEIVPVVIKGKKGETVVDADEHLRPDTTLEALAKLKPVNGPD 245 ALRSQ AQA G+ A EI PV I GK G T+VD DEH R +TT+EALAKLKP+ Sbjct: 185 ALRSQARTAAAQANGFLAGEITPVEIPGKAGPTIVDRDEHPR-ETTMEALAKLKPIVREG 243 Query: 246 KTVTAGNASGVNDGSVALILASAEAVKKHGLKARAKVLGMASAGVAPRVMGIGPVPAVRK 305 TVTAGNASGVNDG+VAL++AS +AVK+HGL RA++ G ASAGV PRVMGIGPVPAVRK Sbjct: 244 GTVTAGNASGVNDGAVALVIASEDAVKRHGLTPRARITGYASAGVEPRVMGIGPVPAVRK 303 Query: 306 LLERLNLSVADFDVIELNEAFAAQGLAVTRELGIADDDARVNPNGGAIALGHPLGASGAR 365 L+ + L++ DFDV+ELNEAFAAQGLAV R+LG+ DD A VN NGGAIALGHPLGASGAR Sbjct: 304 LMAKTGLAIGDFDVVELNEAFAAQGLAVLRQLGLPDDGAHVNANGGAIALGHPLGASGAR 363 Query: 366 LVLTAVHQLEKSGGQRGLCTMCVGVGQGVALAVERV 401 LVLTA+ QLE SGGQRGL T+C+GVGQG ALA ERV Sbjct: 364 LVLTALRQLEASGGQRGLATLCIGVGQGAALAFERV 399 Lambda K H 0.317 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 559 Number of extensions: 23 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 401 Length of database: 399 Length adjustment: 31 Effective length of query: 370 Effective length of database: 368 Effective search space: 136160 Effective search space used: 136160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate CCNA_02490 CCNA_02490 (3-ketoacyl-CoA thiolase)
to HMM TIGR02430 (pcaF: 3-oxoadipyl-CoA thiolase (EC 2.3.1.174))
../bin/blast/fastacmd -i /tmp/list.31299.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31299.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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