Align ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate CCNA_02325 CCNA_02325 ornithine carbamoyltransferase
Query= BRENDA::Q98BB6 (303 letters) >FitnessBrowser__Caulo:CCNA_02325 Length = 311 Score = 320 bits (821), Expect = 2e-92 Identities = 170/307 (55%), Positives = 206/307 (67%), Gaps = 9/307 (2%) Query: 4 RHFTDLSTVSEGDLRFMLDDAVVRKARLKAGERTR-----PLEGKVLAMIFDKPSTRTRV 58 RHF DL + LR +LDDA RKA K + + P + +VL+MIF K STRTR Sbjct: 5 RHFIDLWKLDGATLRLLLDDAHARKAARKGWPQGKVDADAPAKDRVLSMIFQKNSTRTRF 64 Query: 59 SFDVGMRQLGGETIMLTGTEMQLGRSETIADTAKVLSRYVDAIMIRTTSHDRLLELTENA 118 SFD MRQLGG I+ T ++MQLGR ETI DTAKVLSR VDA+MIR SH + + + Sbjct: 65 SFDAAMRQLGGSAIISTASDMQLGRGETIEDTAKVLSRMVDAVMIRANSHADVERFAQVS 124 Query: 119 TVPVINGLTDDTHPCQLMADIMTFEEHRGPVAGKTIAWTGDGNNVLHSLLEASARFRFNL 178 TVP+INGLTD +HPCQ+MADI+T EEHRGP+AGKTIAW GDGNNV S + A+ F L Sbjct: 125 TVPIINGLTDKSHPCQIMADILTIEEHRGPIAGKTIAWVGDGNNVCSSFIHAAPLLGFEL 184 Query: 179 NVAVPEGSEPAQKHIDWSKAHG--GKLHFTRSPEEAVDQADCVVTDCWVSMGQEHRARGH 236 +A P A H D ++A G GK+ T P+ AV AD VV D WVSMG Sbjct: 185 KIACP-AVYHADLH-DLARAEGLQGKVSMTTDPKAAVSGADVVVADTWVSMGDTDHDERL 242 Query: 237 NVFSPYQVNAKLMAHAKPDALFMHCLPAHRGEEVTDEVIDGPHSVVFDEAENRLHAQKAV 296 PYQV+ +LM A + +F+HCLPAHRGEEVTD V+DGP S+V+DEAENR+HAQK+V Sbjct: 243 AALEPYQVDDRLMDLAAGNGVFLHCLPAHRGEEVTDAVLDGPRSLVWDEAENRIHAQKSV 302 Query: 297 LAWCLGA 303 LAWC GA Sbjct: 303 LAWCFGA 309 Lambda K H 0.320 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 335 Number of extensions: 10 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 303 Length of database: 311 Length adjustment: 27 Effective length of query: 276 Effective length of database: 284 Effective search space: 78384 Effective search space used: 78384 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate CCNA_02325 CCNA_02325 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))
../bin/blast/fastacmd -i /tmp/list.6775.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.6775.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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