Align aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) (characterized)
to candidate CCNA_00618 CCNA_00618 succinylglutamic semialdehyde dehydrogenase
Query= BRENDA::P76217 (492 letters) >FitnessBrowser__Caulo:CCNA_00618 Length = 472 Score = 490 bits (1261), Expect = e-143 Identities = 254/471 (53%), Positives = 321/471 (68%), Gaps = 4/471 (0%) Query: 15 ASR-VKRNPVSGEVLWQGNDADAAQVEQACRAARAAFPRWARLSFAERHAVVERFAALLE 73 ASR + R+P +GE + DA ++ AC +ARAAF WA AER A+ RFA + Sbjct: 3 ASRLISRDPYTGEAIADFAVNDARSIDAACHSARAAFAEWAMTPLAERRAIALRFAETVR 62 Query: 74 SNKAELTAIIARETGKPRWEAATEVTAMINKIAISIKAYHVRTGEQRSEMPDGAASLRHR 133 + + E+ +IARETGKP WEA TE ++ K+AISI+A R GE+ M D A L HR Sbjct: 63 ARREEIATLIARETGKPMWEALTEADSVAAKVAISIRAQDERAGERSEPMADATARLAHR 122 Query: 134 PHGVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGV 193 PHGVLAV GP+NFP HL NGHIVPALLAGN ++FKPSE TP G+ + LW+ AGLP V Sbjct: 123 PHGVLAVIGPFNFPMHLANGHIVPALLAGNAVVFKPSEKTPACGQLMGELWRAAGLPDHV 182 Query: 194 LNLVQGGRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIID 253 L +V GG E G+AL E LDG+LFTG G +HR L+ P KILALE+GGN PL++ Sbjct: 183 LTIVIGGGEAGEALVRHEALDGVLFTGGVQAGRAIHRALADAPHKILALELGGNAPLVVW 242 Query: 254 EVADIDAAVHLTIQSAFVTAGQRCTCARRLLLKSGAQGDAFLARLVAVSQRLTPGNWDDE 313 +VADI+AA HL +QSA+VTAGQRCTCARRL+L GA+GDA L L + RL G Sbjct: 243 DVADIEAAAHLIVQSAYVTAGQRCTCARRLILPEGARGDALLEALTMLMDRLVIGGPFQS 302 Query: 314 PQPFIGGLISEQAAQQVVTAWQQLEAMGGRPLLAPRLLQAGTSLLTPGIIEMTGVAGVPD 373 P PF+G +I AA QV+ A ++ A GGRPL + +A ++LL+PG+IE+T A + D Sbjct: 303 PAPFMGPVIDAHAAAQVLAAQDRMTADGGRPLRLAAVREARSALLSPGLIELTD-APLRD 361 Query: 374 EEVFGPLLRVWRYDTFDEAIRMANNTRFGLSCGLVSPEREKFDQLLLEARAGIVNWNKPL 433 EE+FGPLL+V R FD A+ +AN TRFGL+ GL+S + + + RAGIVNWN+P Sbjct: 362 EEIFGPLLQVRRAADFDAALALANATRFGLAAGLISDDEALYRRFWTSVRAGIVNWNRPT 421 Query: 434 TGAASTAPFGGIGASGNHRPSAWYAADYCAWPMASLESDS--LTLPATLNP 482 TGA+S APFGG+G SGNHRPSA+YAADY A+P+A LES S LP LNP Sbjct: 422 TGASSAAPFGGVGGSGNHRPSAYYAADYSAYPVAGLESPSPVYRLPIGLNP 472 Lambda K H 0.318 0.134 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 718 Number of extensions: 27 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 492 Length of database: 472 Length adjustment: 34 Effective length of query: 458 Effective length of database: 438 Effective search space: 200604 Effective search space used: 200604 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.6 bits)
Align candidate CCNA_00618 CCNA_00618 (succinylglutamic semialdehyde dehydrogenase)
to HMM TIGR03240 (astD: succinylglutamate-semialdehyde dehydrogenase (EC 1.2.1.71))
../bin/blast/fastacmd -i /tmp/list.18957.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18957.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.