Align UDP-glucose 4-epimerase; EC 5.1.3.2; Galactowaldenase; UDP-galactose 4-epimerase (uncharacterized)
to candidate CCNA_00090 CCNA_00090 UDP-glucose 4-epimerase
Query= curated2:Q59745 (327 letters) >FitnessBrowser__Caulo:CCNA_00090 Length = 327 Score = 425 bits (1092), Expect = e-124 Identities = 202/318 (63%), Positives = 245/318 (77%) Query: 4 ETVLVVGGAGYIGSHTCLDLANKGYRPVVFDNFSNGHREFVRWGPAEEGDIRDRARLDEV 63 +TVLV GGAGY+GSH CL LA G+RPVVFD+ SNGHRE V+WGP E GDIRD ARLD V Sbjct: 2 QTVLVTGGAGYVGSHCCLALAEAGFRPVVFDDLSNGHREHVQWGPLEVGDIRDAARLDAV 61 Query: 64 LAKHKPAAILHFAALIEVGESVKDPVSFYENNVIGTLTLLSAAQAAGINAFVFSSTCATY 123 A + P A+LHFAA IEVGESVK+P +F++ NV GT+TL+ AA+ AG+ VFSSTCAT+ Sbjct: 62 FAAYAPVAVLHFAARIEVGESVKNPGAFFDTNVGGTITLIEAARRAGVKVVVFSSTCATF 121 Query: 124 GLPQSVPLDETHRQVPINPYGRTKYIVEQALADYDQYGSLRSVVLRYFNAAGADFEGRIG 183 G P +P+ ETH Q P+NPYGR+K +VEQALADYD+Y L+S V+RYFNAAGAD +GRIG Sbjct: 122 GDPVDLPMKETHPQAPLNPYGRSKLMVEQALADYDRYVGLKSAVMRYFNAAGADPQGRIG 181 Query: 184 EWHQPETHAIPLAIDAALGRRQGFKVFGSDYETRDGTCVRDYIHVLDLADAHVRAVEYLL 243 EWH+PETHA+PLAI ALG+R F +FG DY+TRDGT VRDY+HVLDLADAHV A++ LL Sbjct: 182 EWHEPETHAVPLAIQVALGQRPRFTIFGDDYDTRDGTAVRDYVHVLDLADAHVAALKRLL 241 Query: 244 KGGDSVALNLGTGTGTTVKELLGAIEEVSNRPFPVEYIGRREGDSHTLVANNDKARDVLG 303 GG S NLGTGTGTTV+EL+ + +V+ P PVE RR GD+ LV ++ KAR LG Sbjct: 242 VGGSSETYNLGTGTGTTVRELVDGVGKVAGAPLPVEIASRRPGDAPVLVGDHAKARAELG 301 Query: 304 WVPQYDLSEIIRSAWDWH 321 W L EI+ +AW WH Sbjct: 302 WKASRSLDEILSTAWRWH 319 Lambda K H 0.319 0.137 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 412 Number of extensions: 11 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 327 Length of database: 327 Length adjustment: 28 Effective length of query: 299 Effective length of database: 299 Effective search space: 89401 Effective search space used: 89401 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate CCNA_00090 CCNA_00090 (UDP-glucose 4-epimerase)
to HMM TIGR01179 (galE: UDP-glucose 4-epimerase GalE (EC 5.1.3.2))
../bin/blast/fastacmd -i /tmp/list.21364.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21364.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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