Align Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 (characterized)
to candidate CCNA_01970 CCNA_01970 triosephosphate isomerase
Query= SwissProt::Q8L1Z5 (254 letters) >FitnessBrowser__Caulo:CCNA_01970 Length = 253 Score = 223 bits (569), Expect = 2e-63 Identities = 117/242 (48%), Positives = 158/242 (65%), Gaps = 1/242 (0%) Query: 6 RPFIAGNWKMNGTGESLGELRAIAAGISSDLGRLFEALICVPATLLSRAFDILGGENILL 65 RP IAGNWKMNG +L E RA+AA + + A+ PATLL R + G ++L Sbjct: 9 RPLIAGNWKMNGLSVALDEARAVAAALEAKPPAARVAIF-PPATLLHRLSQAVEGAHLLT 67 Query: 66 GGQNCHFDDYGPYTGDISAFMLKEAGASHVIIGHSERRTVYQESDAIVRAKVQAAWRAGL 125 GGQ+CH G +TGD+SA M+ +AG S VI GHSERRT + E+ A V K +AA AGL Sbjct: 68 GGQDCHGKSSGAHTGDVSAEMVADAGGSLVICGHSERRTDHGETSAQVAGKAEAAAAAGL 127 Query: 126 VALICVGETLEERKSNKVLDVLTRQLEGSLPDGATAENIIIAYEPVWAVGTGNTATSADV 185 ++CVGETLE R++ + + + Q+ SLP + +AYEP+WA+GTG TA+ ++ Sbjct: 128 EPIVCVGETLETREAGQAVSFVVSQVRDSLPTSLAGKAFSVAYEPLWAIGTGRTASVDNI 187 Query: 186 AEVHAFIHHKMHSRFGDEGAKIRLLYGGSVKPSNAFELLSTAHVNGALIGGASLKAIDFL 245 E+HA I ++ SRF ++G + +LYGGSVKP NA E+L+ V GAL+GGASLKA DFL Sbjct: 188 VEMHAAIRAELVSRFCEQGRTVLILYGGSVKPENAREILAAPEVGGALVGGASLKAKDFL 247 Query: 246 TI 247 I Sbjct: 248 AI 249 Lambda K H 0.320 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 218 Number of extensions: 8 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 254 Length of database: 253 Length adjustment: 24 Effective length of query: 230 Effective length of database: 229 Effective search space: 52670 Effective search space used: 52670 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate CCNA_01970 CCNA_01970 (triosephosphate isomerase)
to HMM TIGR00419 (tpiA: triose-phosphate isomerase (EC 5.3.1.1))
../bin/blast/fastacmd -i /tmp/list.29263.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.29263.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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