Align Imidazolonepropionase (EC 3.5.2.7) (characterized)
to candidate CCNA_01011 CCNA_01011 imidazolonepropionase
Query= reanno::Korea:Ga0059261_3964 (395 letters) >FitnessBrowser__Caulo:CCNA_01011 Length = 401 Score = 538 bits (1387), Expect = e-158 Identities = 285/397 (71%), Positives = 318/397 (80%), Gaps = 8/397 (2%) Query: 6 DTLWRNARLATMTG--DGLGIVEQGAIAATGGTISYIGPDSDAP--DAAEIVDCQGRWIT 61 D +W NARLAT+ GLGIVE G +A GG I+Y GP + AP +AAE +D GRWIT Sbjct: 4 DRVWINARLATLAPGRQGLGIVEDGVVACLGGRIAYAGPAAAAPTFEAAESIDVDGRWIT 63 Query: 62 PGLVDCHTHLVHAGNRAREFEARLEGATYEEIARAGGGILSTVTATRAASEDELIASALP 121 PGL+D HTHLV AG+RA EFE RL GA+YEEIARAGGGI+ST+ ATRAASE ELIA+ALP Sbjct: 64 PGLIDPHTHLVFAGDRAHEFELRLAGASYEEIARAGGGIVSTMRATRAASEAELIAAALP 123 Query: 122 RLDQLIAEGVTTVEIKSGYGLTLDDELKMLRAARSLGEARNVHIRTTLLAAHAVPPEYKG 181 RLD L+AEGVTTVEIKSGYGL+LDDELK LRAAR+L + R V + TT L AHA+PPEY+ Sbjct: 124 RLDALLAEGVTTVEIKSGYGLSLDDELKSLRAARALADIRRVGVTTTFLGAHALPPEYRD 183 Query: 182 DADGYVDLVCETIIPA--AIGHADAVDAFCEGIGFSPEQTDRVLAAAVAHGLPVKLHAEQ 239 D DGYVDLVC+T+IPA A G ADAVD FCEGIGFSP Q RV AA AHGLPVKLHAEQ Sbjct: 184 DEDGYVDLVCQTMIPAIAARGLADAVDGFCEGIGFSPAQIRRVFDAAKAHGLPVKLHAEQ 243 Query: 240 LSNLHGAALAAHHNALSADHLEHLDEAGIAAMAASGTVATLLPGAFYFTREEHRPPIAAL 299 LSNL GAALAA +NALSADHLEHLD AGIAAMAASGTVATLLPGA+YFTRE PPIAAL Sbjct: 244 LSNLSGAALAAEYNALSADHLEHLDAAGIAAMAASGTVATLLPGAYYFTRETLVPPIAAL 303 Query: 300 RAAGVPIALATDCNPGTSPMASILLAANMGATFFRLTVTECLRGITVNGARALGLRT--G 357 RAAGVP+ALATDCNPGTSP+ S LL NM AT FR+TV ECL G+T ARALGL G Sbjct: 304 RAAGVPMALATDCNPGTSPLTSPLLVMNMAATLFRMTVEECLAGVTREAARALGLLADRG 363 Query: 358 TLEPGGPADLAIWNVTDLAELVYRIGANPLHSRIYAG 394 TLE G DLAIW+V AELVYR+G NPLH+R++ G Sbjct: 364 TLEAGKACDLAIWDVERPAELVYRMGFNPLHARVWRG 400 Lambda K H 0.318 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 563 Number of extensions: 21 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 395 Length of database: 401 Length adjustment: 31 Effective length of query: 364 Effective length of database: 370 Effective search space: 134680 Effective search space used: 134680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate CCNA_01011 CCNA_01011 (imidazolonepropionase)
to HMM TIGR01224 (hutI: imidazolonepropionase (EC 3.5.2.7))
../bin/blast/fastacmd -i /tmp/list.15569.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15569.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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