Align subunit of β-ketoadipyl CoA thiolase (EC 2.3.1.174; EC 2.3.1.16) (characterized)
to candidate CCNA_02490 CCNA_02490 3-ketoacyl-CoA thiolase
Query= metacyc::MONOMER-3207 (400 letters) >FitnessBrowser__Caulo:CCNA_02490 Length = 399 Score = 564 bits (1454), Expect = e-165 Identities = 286/400 (71%), Positives = 331/400 (82%), Gaps = 1/400 (0%) Query: 1 MRDVFICDAIRTPIGRFGGALAGVRADDLAAVPLKALIEPNPAVQWDQVDEVFFGCANQA 60 M +ICD IRTPIGR+GG+L+ VRADDLAA+PLKAL+ NP++ +DE+ G ANQA Sbjct: 1 MTAAYICDGIRTPIGRYGGSLSKVRADDLAAIPLKALVARNPSLDLAAIDEIVLGSANQA 60 Query: 61 GEDNRNVARMALLLAGLPESIPGVTLNRLCASGMDAIGTAFRAIASGEMELAIAGGVESM 120 GEDNRNVARMALLLAG P S+PGVT+NRLCASG++A+G A RAIASG +L IAGGVESM Sbjct: 61 GEDNRNVARMALLLAGYPVSVPGVTVNRLCASGLEAVGYAARAIASGHNDLVIAGGVESM 120 Query: 121 SRAPFVMGKAESGYSRNMKLEDTTIGWRFINPLMKSQYGVDSMPETADNVADDYQVSRAD 180 SRAPFVMGKA+S +SR+ ++ DTTIGWRF+NP M+ YGVDSMPETA+NVA DY V+R D Sbjct: 121 SRAPFVMGKADSAFSRSAEIFDTTIGWRFVNPAMRKLYGVDSMPETAENVATDYGVNRED 180 Query: 181 QDAFALRSQQKAAAAQAAGFFAEEIVPVRIAHKKGETIVERDEHLRPETTLEALTKLKPV 240 QDAFALRSQ + AAAQA GF A EI PV I K G TIV+RDEH R ETT+EAL KLKP+ Sbjct: 181 QDAFALRSQARTAAAQANGFLAGEITPVEIPGKAGPTIVDRDEHPR-ETTMEALAKLKPI 239 Query: 241 NGPDKTVTAGNASGVNDGAAALILASAEAVKKHGLTPRARVLGMASGGVAPRVMGIGPVP 300 TVTAGNASGVNDGA AL++AS +AVK+HGLTPRAR+ G AS GV PRVMGIGPVP Sbjct: 240 VREGGTVTAGNASGVNDGAVALVIASEDAVKRHGLTPRARITGYASAGVEPRVMGIGPVP 299 Query: 301 AVRKLTERLGVAVSDFDVIELNEAFASQGLAVLRELGVADDAPQVNPNGGAIALGHPLGM 360 AVRKL + G+A+ DFDV+ELNEAFA+QGLAVLR+LG+ DD VN NGGAIALGHPLG Sbjct: 300 AVRKLMAKTGLAIGDFDVVELNEAFAAQGLAVLRQLGLPDDGAHVNANGGAIALGHPLGA 359 Query: 361 SGARLVLTALHQLEKSGGRKGLATMCVGVGQGLALAIERV 400 SGARLVLTAL QLE SGG++GLAT+C+GVGQG ALA ERV Sbjct: 360 SGARLVLTALRQLEASGGQRGLATLCIGVGQGAALAFERV 399 Lambda K H 0.318 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 551 Number of extensions: 17 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 400 Length of database: 399 Length adjustment: 31 Effective length of query: 369 Effective length of database: 368 Effective search space: 135792 Effective search space used: 135792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate CCNA_02490 CCNA_02490 (3-ketoacyl-CoA thiolase)
to HMM TIGR01930 (acetyl-CoA C-acyltransferase (EC 2.3.1.16))
../bin/blast/fastacmd -i /tmp/list.9382.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9382.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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