Align Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (characterized)
to candidate CCNA_02615 CCNA_02615 homogentisate 1,2-dioxygenase
Query= reanno::pseudo6_N2E2:Pf6N2E2_5290 (434 letters) >FitnessBrowser__Caulo:CCNA_02615 Length = 425 Score = 560 bits (1442), Expect = e-164 Identities = 272/420 (64%), Positives = 321/420 (76%), Gaps = 3/420 (0%) Query: 9 DLAYQSGFGNEFASEALPGALPVGQNSPQKVPYGLYAELFSGTAFTMARSEARRTWMYRI 68 DL YQ+GFG+ F +EA PGALPVG+NSPQKVP+GLYAE SG+AFT R E RRTW+YR+ Sbjct: 2 DLRYQTGFGSYFETEAHPGALPVGRNSPQKVPFGLYAEQLSGSAFTAPRHENRRTWLYRL 61 Query: 69 RPSANHPAFTRLER-QLAGGPLGEVTPNRLRWNPLEIPAEPTDFIDGLVCMAANAGADKP 127 RPSA H A+ + +L G TPNRLRW+PLEIPA PTDF+DGLV +A NA A Sbjct: 62 RPSAGHEAYQPYAQDKLVSAFPGPATPNRLRWSPLEIPAAPTDFVDGLVSLAGNADAATL 121 Query: 128 AGISLYQYQANRSME-RVFFNADGEWLIVPQLGRLRITTELGVLELAPLEIVVLPRGLKF 186 GI+ + Y N SM+ RVF+NADGE LIVPQ+G L + TE+GVL+ P I V+PRG++F Sbjct: 122 GGIAAHVYLVNVSMKNRVFYNADGEMLIVPQMGELTLVTEMGVLKAGPGHIAVIPRGVRF 181 Query: 187 RIELLDPQARGYLAENHGAPLRLPDLGPIGSNGLANPRDFLTPVAHYENLAQPTSLVQKF 246 R+E+ P ARGY+ EN+GA RLP+LGPIG+NGLANPRDF PVA +E++ PT ++QKF Sbjct: 182 RVEVEGP-ARGYVCENYGAAFRLPELGPIGANGLANPRDFEAPVAAFEDIDTPTQVIQKF 240 Query: 247 LGELWGCELDHSPLDVVAWHGNNVPYKYDLRRFNTIGTVSFDHPDPSIFTVLTSPTSVHG 306 G LW DHSPLDVVAWHGN PY+YDL RFNTI TVS+DHPDPSIFTVLTSP+ G Sbjct: 241 QGALWAATWDHSPLDVVAWHGNLTPYRYDLSRFNTINTVSYDHPDPSIFTVLTSPSDTPG 300 Query: 307 LANLDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIQGAYDAKAEGFLPGGASLHSCMS 366 AN DFVIFPPRWMVAE+TFRPPWFHRN+M+EFMGLI GAYDAKA GF+PGGASLH+CMS Sbjct: 301 TANCDFVIFPPRWMVAEDTFRPPWFHRNVMSEFMGLIHGAYDAKAGGFVPGGASLHNCMS 360 Query: 367 AHGPDGETCTKAINAELQPVKIDNTMAFMFETSQVLRPSRFALDCPQLQTDYDACWASLP 426 HGPD + KA L P KID TMAFMFE+ V RP+ AL+ LQ+DYDACW P Sbjct: 361 DHGPDVASHKKATEVVLAPHKIDGTMAFMFESRWVFRPTHLALESAALQSDYDACWTGFP 420 Lambda K H 0.321 0.138 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 746 Number of extensions: 28 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 434 Length of database: 425 Length adjustment: 32 Effective length of query: 402 Effective length of database: 393 Effective search space: 157986 Effective search space used: 157986 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate CCNA_02615 CCNA_02615 (homogentisate 1,2-dioxygenase)
to HMM TIGR01015 (hmgA: homogentisate 1,2-dioxygenase (EC 1.13.11.5))
../bin/blast/fastacmd -i /tmp/list.17065.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17065.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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