Align L-serine ammonia-lyase (EC 4.3.1.17) (characterized)
to candidate CCNA_03206 CCNA_03206 L-serine dehydratase
Query= reanno::pseudo13_GW456_L13:PfGW456L13_4954 (458 letters) >FitnessBrowser__Caulo:CCNA_03206 Length = 462 Score = 488 bits (1256), Expect = e-142 Identities = 257/464 (55%), Positives = 335/464 (72%), Gaps = 8/464 (1%) Query: 1 MAISVFDLFKVGIGPSSSHTVGPMRAAATFAQALVDHGFLADVRRVEIRLYGSLSATGVG 60 M SVFDLFK+G+GPSSSHT+GPM AA F L D G LA V RVE RLY SL+ TG G Sbjct: 1 MTASVFDLFKLGVGPSSSHTMGPMTAAVLFIGRLRDAGKLAAVARVETRLYASLALTGRG 60 Query: 61 HATDRACVMGLMGEWPDRIDPTTIDSRIHTLRETGKLCLAGVAQIAFDWQRDLLLLD-ES 119 HATDRA ++GLMG P +DP ++ + + + L L G IAFD RD++ L E Sbjct: 61 HATDRAVILGLMGFVPADLDPDAGEAALLDCQASQSLKLGGEVDIAFDEARDIVWLGHER 120 Query: 120 LPYHPNAMSLTAFGETGE-LFEQTYYSVGGGFIIEAAEAESGIAPAGDVVLPYDFSSAAE 178 LP HPNA++ A+ + G+ L E+TY+S+GGGF+ + AE P +P+ F SAA+ Sbjct: 121 LPQHPNALTFAAYDKAGQVLAERTYFSIGGGFVRDEAEMGRNAPPDEGPAIPFPFESAAD 180 Query: 179 LLKLCNEHGLRVGELMMANERAWRSDAEIRQGLLHIWSVMRECVEQGLRHEGILPGGLSV 238 LL+ + GL + E+M ANERA S E+ GL I+ M C+++G+R EG+LPGGL+V Sbjct: 181 LLERAEQAGLSIAEVMAANERARMSQGEMDAGLDRIFGAMEACIDRGMRQEGVLPGGLTV 240 Query: 239 PRRAAKLHRSLQEIGKPNVITSTLSAMEWVNLYALAVNEENAAGGRMVTAPTNGAAGIIP 298 RRA ++H+++Q ++ L+AM++VNL+A+AVNEENAAGGR+VTAPTNGAAG+IP Sbjct: 241 KRRARQIHQTIQG-RMERQMSDPLAAMDFVNLWAMAVNEENAAGGRVVTAPTNGAAGLIP 299 Query: 299 AVLHYYMKFNADASDDDVVAFFLGAAAVGILCKKNASISGAEVGCQGEVGSACAMAAAGL 358 AVL ++++F + + + F L AAA+G L K+NASISGAEVGCQGEVG AC+MAAAGL Sbjct: 300 AVLRFFVRFYK-GTPEQIRTFLLTAAAIGALYKRNASISGAEVGCQGEVGVACSMAAAGL 358 Query: 359 AEVLGATPEQLENAAEIGLEHNLGLTCDPVGGLVQVPCIERNAIAAVKAINATQMALRGD 418 A LG T Q+ENAAEIG+EHNLGLTCDP+GGLVQ+PCIERNA+ A+KAI+A ++AL GD Sbjct: 359 AAALGGTNAQIENAAEIGMEHNLGLTCDPIGGLVQIPCIERNAMGAIKAIDAARLALLGD 418 Query: 419 GKHFISLDRVIRTMRDTGADMHDKYKETSRGGLA----VNWVEC 458 G+H +SLD+VI TM+ TG DM++ YKETS GGLA VN VEC Sbjct: 419 GQHSVSLDKVIATMKRTGEDMNEIYKETSMGGLAVGLSVNRVEC 462 Lambda K H 0.320 0.135 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 539 Number of extensions: 19 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 458 Length of database: 462 Length adjustment: 33 Effective length of query: 425 Effective length of database: 429 Effective search space: 182325 Effective search space used: 182325 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate CCNA_03206 CCNA_03206 (L-serine dehydratase)
to HMM TIGR00720 (L-serine ammonia-lyase (EC 4.3.1.17))
../bin/blast/fastacmd -i /tmp/list.8842.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8842.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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